Analysis of interatomic Contacts of Structural Units in PDB entry:
1VM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VM6 entry

There are 4 chains in PDB entry 1VM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLY 214
B
 HIS -4PHE 213
C
 MET 1GLY 215
D
 HIS -3PHE 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 1VM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
50 52Right-handed 310
Helix 3
3
A
53 65Right-handed alpha
Helix 4
4
A
76 87Right-handed alpha
Helix 5
5
A
99 116Right-handed alpha
Helix 6
6
A
136 146Right-handed alpha
Helix 7
7
A
184 199Right-handed alpha
Helix 8
8
A
207 213Right-handed alpha
Helix 9
9
B
10 23Right-handed alpha
Helix 10
10
B
50 52Right-handed 310
Helix 11
11
B
53 65Right-handed alpha
Helix 12
12
B
76 87Right-handed alpha
Helix 13
13
B
99 116Right-handed alpha
Helix 14
14
B
136 147Right-handed alpha
Helix 15
15
B
184 199Right-handed alpha
Helix 16
16
B
207 213Right-handed alpha
Helix 17
17
C
10 23Right-handed alpha
Helix 18
18
C
50 52Right-handed 310
Helix 19
19
C
53 65Right-handed alpha
Helix 20
20
C
76 87Right-handed alpha
Helix 21
21
C
99 116Right-handed alpha
Helix 22
22
C
136 146Right-handed alpha
Helix 23
23
C
184 199Right-handed alpha
Helix 24
24
C
207 214Right-handed alpha
Helix 25
25
D
10 23Right-handed alpha
Helix 26
26
D
50 52Right-handed 310
Helix 27
27
D
53 65Right-handed alpha
Helix 28
28
D
76 87Right-handed alpha
Helix 29
29
D
99 116Right-handed alpha
Helix 30
30
D
136 147Right-handed alpha
Helix 31
31
D
184 199Right-handed alpha
Helix 32
32
D
207 213Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1VM6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
26 32anti-parallel
Strand 3
A
2 6parallel
Strand 4
A
44 47parallel
Strand 5
A
67 70parallel
Strand 6
A
91 94parallel
Strand 7
A
204 206parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
120 127parallel
Strand 3
A
163 169anti-parallel
Strand 4
A
173 181anti-parallel
Strand 5
D
173 181anti-parallel
Strand 6
D
163 169anti-parallel
Strand 7
D
120 127anti-parallel
Strand 8
D
152 156parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
26 32anti-parallel
Strand 3
B
2 6parallel
Strand 4
B
44 47parallel
Strand 5
B
67 70parallel
Strand 6
B
91 94parallel
Strand 7
B
204 206parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
120 127parallel
Strand 3
B
163 169anti-parallel
Strand 4
B
173 181anti-parallel
Strand 5
C
173 181anti-parallel
Strand 6
C
163 169anti-parallel
Strand 7
C
120 127anti-parallel
Strand 8
C
152 156parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 38first strand
Strand 2
C
26 32anti-parallel
Strand 3
C
2 6parallel
Strand 4
C
44 47parallel
Strand 5
C
67 70parallel
Strand 6
C
91 94parallel
Strand 7
C
204 205parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 38first strand
Strand 2
D
26 32anti-parallel
Strand 3
D
2 6parallel
Strand 4
D
44 47parallel
Strand 5
D
67 70parallel
Strand 6
D
91 94parallel
Strand 7
D
204 206parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il