Analysis of interatomic Contacts of Structural Units in PDB entry:
1VM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VM7 entry

There are 2 chains in PDB entry 1VM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 299
B
 PHE 2ASN 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1VM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 54Right-handed alpha
Helix 2
2
A
66 79Right-handed alpha
Helix 3
3
A
110 116Right-handed 310
Helix 4
4
A
117 121Right-handed 310
Helix 5
5
A
122 127Right-handed alpha
Helix 6
6
A
139 150Right-handed alpha
Helix 7
7
A
165 172Right-handed 310
Helix 8
8
A
178 191Right-handed alpha
Helix 9
9
A
195 206Right-handed alpha
Helix 10
10
A
216 218Right-handed 310
Helix 11
11
A
243 258Right-handed alpha
Helix 12
12
A
261 277Right-handed alpha
Helix 13
13
A
282 286Right-handed 310
Helix 14
14
A
288 298Right-handed alpha
Helix 15
15
B
40 54Right-handed alpha
Helix 16
16
B
66 80Right-handed alpha
Helix 17
17
B
110 116Right-handed 310
Helix 18
18
B
117 121Right-handed 310
Helix 19
19
B
122 127Right-handed alpha
Helix 20
20
B
139 150Right-handed alpha
Helix 21
21
B
165 172Right-handed 310
Helix 22
22
B
178 191Right-handed alpha
Helix 23
23
B
195 206Right-handed alpha
Helix 24
24
B
216 218Right-handed 310
Helix 25
25
B
243 258Right-handed alpha
Helix 26
26
B
261 277Right-handed alpha
Helix 27
27
B
282 286Right-handed 310
Helix 28
28
B
288 298Right-handed alpha
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There are 4 sheets in PDB entry 1VM7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
57 63parallel
Strand 3
A
5 8parallel
Strand 4
A
131 134parallel
Strand 5
A
153 156parallel
Strand 6
A
174 175parallel
Strand 7
A
210 214parallel
Strand 8
A
220 224anti-parallel
Strand 9
A
227 231anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
93 98parallel
Strand 4
A
104 109anti-parallel
Strand 5
B
28 30parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
B
104 109parallel
Strand 3
B
93 98anti-parallel
Strand 4
B
12 18parallel
Strand 5
B
33 39anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 86first strand
Strand 2
B
57 63parallel
Strand 3
B
5 8parallel
Strand 4
B
131 134parallel
Strand 5
B
153 156parallel
Strand 6
B
174 175parallel
Strand 7
B
210 214parallel
Strand 8
B
220 224anti-parallel
Strand 9
B
227 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il