Analysis of interatomic Contacts of Structural Units in PDB entry:
1VM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VM8 entry

There are 2 chains in PDB entry 1VM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LEU 517
B
 ASN 2GLU 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1VM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
13 14Right-handed 310
Helix 3
3
A
15 20Right-handed 310
Helix 4
4
A
21 25Right-handed 310
Helix 5
5
A
26 39Right-handed alpha
Helix 6
6
A
43 57Right-handed alpha
Helix 7
7
A
64 67Right-handed 310
Helix 8
8
A
73 75Right-handed 310
Helix 9
9
A
85 100Right-handed alpha
Helix 10
10
A
121 125Right-handed 310
Helix 11
11
A
134 155Right-handed alpha
Helix 12
12
A
170 181Right-handed alpha
Helix 13
13
A
182 186Right-handed 310
Helix 14
14
A
187 189Right-handed 310
Helix 15
15
A
224 233Right-handed alpha
Helix 16
16
A
234 243Right-handed alpha
Helix 17
17
A
261 271Right-handed alpha
Helix 18
18
A
308 314Right-handed alpha
Helix 19
19
A
335 344Right-handed alpha
Helix 20
20
A
344 349Right-handed alpha
Helix 21
21
A
381 389Right-handed 310
Helix 22
22
A
398 403Right-handed alpha
Helix 23
23
A
417 436Right-handed alpha
Helix 24
24
A
494 499Right-handed alpha
Helix 25
25
B
2 13Right-handed alpha
Helix 26
26
B
15 20Right-handed 310
Helix 27
27
B
21 25Right-handed 310
Helix 28
28
B
26 40Right-handed alpha
Helix 29
29
B
41 57Right-handed alpha
Helix 30
30
B
58 62Right-handed 310
Helix 31
31
B
64 67Right-handed 310
Helix 32
32
B
73 75Right-handed 310
Helix 33
33
B
86 100Right-handed alpha
Helix 34
34
B
134 155Right-handed alpha
Helix 35
35
B
167 169Right-handed 310
Helix 36
36
B
170 181Right-handed alpha
Helix 37
37
B
182 186Right-handed 310
Helix 38
38
B
187 189Right-handed 310
Helix 39
39
B
224 233Right-handed alpha
Helix 40
40
B
234 242Right-handed alpha
Helix 41
41
B
261 271Right-handed alpha
Helix 42
42
B
303 307Right-handed 310
Helix 43
43
B
308 314Right-handed alpha
Helix 44
44
B
335 344Right-handed alpha
Helix 45
45
B
381 389Right-handed 310
Helix 46
46
B
398 403Right-handed alpha
Helix 47
47
B
417 436Right-handed alpha
Helix 48
48
B
494 499Right-handed alpha
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There are 16 sheets in PDB entry 1VM8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
291 295anti-parallel
Strand 3
A
298 302anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
392 397parallel
Strand 3
A
275 281parallel
Strand 4
A
325 334anti-parallel
Strand 5
A
246 251anti-parallel
Strand 6
A
103 108parallel
Strand 7
A
162 166parallel
Strand 8
A
191 195parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
218 220anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
352 356anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
367 368anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 440first strand
Strand 2
A
501 503parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 483first strand
Strand 2
A
507 510parallel
Strand 3
A
513 516anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
291 295anti-parallel
Strand 3
B
298 302anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
392 397parallel
Strand 3
B
275 281parallel
Strand 4
B
325 334anti-parallel
Strand 5
B
246 251anti-parallel
Strand 6
B
103 108parallel
Strand 7
B
162 166parallel
Strand 8
B
191 195parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
218 220anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
375 379anti-parallel
Strand 3
B
352 356anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 212first strand
Strand 2
B
215 216anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
B
367 368anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 440first strand
Strand 2
B
502 503parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
481 483first strand
Strand 2
B
507 510parallel
Strand 3
B
513 515anti-parallel
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