Analysis of interatomic Contacts of Structural Units in PDB entry:
1VMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VMI entry

There is 1 chain in PDB entry 1VMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR -6ARG 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1VMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-5 8Right-handed alpha
Helix 2
2
A
9 12Right-handed 310
Helix 3
3
A
24 37Right-handed alpha
Helix 4
4
A
47 59Right-handed alpha
Helix 5
5
A
73 89Right-handed alpha
Helix 6
6
A
90 92Right-handed 310
Helix 7
7
A
95 100Right-handed alpha
Helix 8
8
A
102 113Right-handed alpha
Helix 9
9
A
126 138Right-handed alpha
Helix 10
10
A
174 194Right-handed alpha
Helix 11
11
A
212 229Right-handed alpha
Helix 12
12
A
239 245Right-handed alpha
Helix 13
13
A
245 253Right-handed alpha
Helix 14
14
A
269 285Right-handed alpha
Helix 15
15
A
308 321Right-handed alpha
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There are 2 sheets in PDB entry 1VMI. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
41 45parallel
Strand 3
A
16 19parallel
Strand 4
A
118 121parallel
Strand 5
A
300 302parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 238first strand
Strand 2
A
198 202parallel
Strand 3
A
264 266parallel
Strand 4
A
162 165parallel
Strand 5
A
148 155anti-parallel
Strand 6
A
286 294anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il