Analysis of interatomic Contacts of Structural Units in PDB entry:
1VMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VMK entry

There are 3 chains in PDB entry 1VMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 265
B
 MET 1PHE 265
C
 MET 1PHE 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1VMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 14Right-handed alpha
Helix 2
2
A
46 48Right-handed 310
Helix 3
3
A
81 85Right-handed 310
Helix 4
4
A
87 102Right-handed alpha
Helix 5
5
A
159 171Right-handed alpha
Helix 6
6
A
187 197Right-handed alpha
Helix 7
7
A
206 217Right-handed alpha
Helix 8
8
A
239 265Right-handed alpha
Helix 9
9
B
1 14Right-handed alpha
Helix 10
10
B
31 37Right-handed alpha
Helix 11
11
B
46 48Right-handed 310
Helix 12
12
B
81 85Right-handed 310
Helix 13
13
B
87 102Right-handed alpha
Helix 14
14
B
159 171Right-handed alpha
Helix 15
15
B
187 197Right-handed alpha
Helix 16
16
B
206 216Right-handed alpha
Helix 17
17
B
239 265Right-handed alpha
Helix 18
18
C
1 14Right-handed alpha
Helix 19
19
C
46 48Right-handed 310
Helix 20
20
C
81 85Right-handed 310
Helix 21
21
C
87 102Right-handed alpha
Helix 22
22
C
159 171Right-handed alpha
Helix 23
23
C
187 197Right-handed alpha
Helix 24
24
C
206 216Right-handed alpha
Helix 25
25
C
250 265Right-handed alpha
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There are 3 sheets in PDB entry 1VMK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
22 26parallel
Strand 5
A
105 114parallel
Strand 6
A
219 229parallel
Strand 7
A
124 132anti-parallel
Strand 8
A
173 179parallel
Strand 9
A
201 203parallel
Strand 10
A
105 114anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 44first strand
Strand 2
B
62 68anti-parallel
Strand 3
B
71 77anti-parallel
Strand 4
B
22 26parallel
Strand 5
B
105 114parallel
Strand 6
B
219 229parallel
Strand 7
B
124 133anti-parallel
Strand 8
B
173 180parallel
Strand 9
B
201 203parallel
Strand 10
B
105 114anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 44first strand
Strand 2
C
62 68anti-parallel
Strand 3
C
71 77anti-parallel
Strand 4
C
22 26parallel
Strand 5
C
105 114parallel
Strand 6
C
219 229parallel
Strand 7
C
124 133anti-parallel
Strand 8
C
173 180parallel
Strand 9
C
201 203parallel
Strand 10
C
105 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il