Analysis of interatomic Contacts of Structural Units in PDB entry:
1VMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VMO entry

There are 2 chains in PDB entry 1VMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1LYS 163
B
 ARG 1LYS 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1VMO

There are 10 sheets in PDB entry 1VMO. Click on sheet of interest to get list of strands forming it: S1A, S2A, S3A, S4A, S5A, S1B, S2B, S3B, S4B, S5B,

There are 4 strands in S1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
52 57anti-parallel
Strand 3
A
32 38anti-parallel
Strand 4
A
72 74anti-parallel
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There are 4 strands in S2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
52 57anti-parallel
Strand 3
A
32 38anti-parallel
Strand 4
A
77 79anti-parallel
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There are 4 strands in S3A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
85 91anti-parallel
Strand 4
A
125 127anti-parallel
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There are 4 strands in S4A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
136 142anti-parallel
Strand 4
A
19 21anti-parallel
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There are 4 strands in S5A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
136 142anti-parallel
Strand 4
A
24 26anti-parallel
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There are 4 strands in S1B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
52 57anti-parallel
Strand 3
B
32 38anti-parallel
Strand 4
B
72 74anti-parallel
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There are 4 strands in S2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
52 57anti-parallel
Strand 3
B
32 38anti-parallel
Strand 4
B
77 79anti-parallel
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There are 4 strands in S3B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
105 110anti-parallel
Strand 3
B
85 91anti-parallel
Strand 4
B
125 127anti-parallel
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There are 4 strands in S4B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
136 142anti-parallel
Strand 4
B
19 21anti-parallel
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There are 4 strands in S5B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
136 142anti-parallel
Strand 4
B
24 26anti-parallel
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