Analysis of interatomic Contacts of Structural Units in PDB entry:
1VNH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VNH entry

There is 1 chain in PDB entry 1VNH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 4PRO 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1VNH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
22 40Right-handed alpha
Helix 3
3
A
47 68Right-handed alpha
Helix 4
4
A
85 87Right-handed 310
Helix 5
5
A
98 114Right-handed alpha
Helix 6
6
A
131 147Right-handed alpha
Helix 7
7
A
157 173Right-handed alpha
Helix 8
8
A
226 229Right-handed alpha
Helix 9
9
A
248 250Right-handed 310
Helix 10
10
A
254 268Right-handed alpha
Helix 11
11
A
280 288Right-handed alpha
Helix 12
12
A
300 314Right-handed alpha
Helix 13
13
A
325 356Right-handed alpha
Helix 14
14
A
361 366Right-handed alpha
Helix 15
15
A
403 419Right-handed alpha
Helix 16
16
A
461 463Right-handed 310
Helix 17
17
A
479 493Right-handed alpha
Helix 18
18
A
498 501Right-handed alpha
Helix 19
19
A
504 507Right-handed alpha
Helix 20
20
A
530 532Right-handed 310
Helix 21
21
A
552 565Right-handed alpha
Helix 22
22
A
573 575Right-handed 310
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There are 3 sheets in PDB entry 1VNH. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
202 205first strand
Strand 2
A
215 218anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
449 451first strand
Strand 2
A
466 468anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
436 440first strand
Strand 2
A
473 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il