Analysis of interatomic Contacts of Structural Units in PDB entry:
1VOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VOM entry

There is 1 chain in PDB entry 1VOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ARG 747
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1VOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
22 28Right-handed alpha
Helix 3
3
A
74 76Right-handed 310
Helix 4
4
A
83 85Right-handed 310
Helix 5
5
A
91 93Right-handed 310
Helix 6
6
A
99 112Right-handed alpha
Helix 7
7
A
137 143Right-handed alpha
Helix 8
8
A
148 150Right-handed 310
Helix 9
9
A
155 169Right-handed alpha
Helix 10
10
A
185 199Right-handed alpha
Helix 11
11
A
210 226Right-handed alpha
Helix 12
12
A
265 268Right-handed 310
Helix 13
13
A
279 287Right-handed alpha
Helix 14
14
A
290 295Right-handed alpha
Helix 15
15
A
301 303Right-handed 310
Helix 16
16
A
320 334Right-handed alpha
Helix 17
17
A
338 356Right-handed alpha
Helix 18
18
A
373 382Right-handed alpha
Helix 19
19
A
386 394Right-handed alpha
Helix 20
20
A
411 441Right-handed alpha
Helix 21
21
A
466 486Right-handed alpha
Helix 22
22
A
488 496Right-handed alpha
Helix 23
23
A
511 518Right-handed alpha
Helix 24
24
A
525 534Right-handed alpha
Helix 25
25
A
540 551Right-handed alpha
Helix 26
26
A
584 589Right-handed alpha
Helix 27
27
A
594 601Right-handed alpha
Helix 28
28
A
606 613Right-handed alpha
Helix 29
29
A
615 618Right-handed alpha
Helix 30
30
A
630 647Right-handed alpha
Helix 31
31
A
669 679Right-handed alpha
Helix 32
32
A
681 690Right-handed alpha
Helix 33
33
A
698 704Right-handed alpha
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There are 7 sheets in PDB entry 1VOM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
48 51anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
59 63anti-parallel
Strand 3
A
52 55anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
649 656parallel
Strand 4
A
173 178parallel
Strand 5
A
448 454parallel
Strand 6
A
240 247anti-parallel
Strand 7
A
253 261anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
367 369anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 400first strand
Strand 2
A
403 406anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 560first strand
Strand 2
A
567 572anti-parallel
Strand 3
A
575 580anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
694 697first strand
Strand 2
A
743 746anti-parallel
Strand 3
A
737 739anti-parallel
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