Analysis of interatomic Contacts of Structural Units in PDB entry:
1VOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VOT entry

There is 1 chain in PDB entry 1VOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4CYS 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1VOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 43Right-handed 310
Helix 2
2
A
79 84Right-handed alpha
Helix 3
3
A
128 130Right-handed 310
Helix 4
4
A
133 139Right-handed alpha
Helix 5
5
A
151 155Right-handed alpha
Helix 6
6
A
168 187Right-handed alpha
Helix 7
7
A
201 209Right-handed alpha
Helix 8
8
A
213 218Right-handed 310
Helix 9
9
A
238 252Right-handed alpha
Helix 10
10
A
259 266Right-handed alpha
Helix 11
11
A
271 276Right-handed alpha
Helix 12
12
A
278 281Right-handed 310
Helix 13
13
A
305 311Right-handed alpha
Helix 14
14
A
329 335Right-handed alpha
Helix 15
15
A
349 359Right-handed alpha
Helix 16
16
A
365 375Right-handed alpha
Helix 17
17
A
384 399Right-handed alpha
Helix 18
18
A
401 413Right-handed alpha
Helix 19
19
A
434 436Right-handed 310
Helix 20
20
A
444 447Right-handed alpha
Helix 21
21
A
450 452Right-handed 310
Helix 22
22
A
454 456Right-handed 310
Helix 23
23
A
460 479Right-handed alpha
Helix 24
24
A
518 525Right-handed alpha
Helix 25
25
A
527 534Right-handed alpha
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There are 3 sheets in PDB entry 1VOT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
13 16anti-parallel
Strand 3
A
57 59parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
25 30anti-parallel
Strand 3
A
98 101anti-parallel
Strand 4
A
142 145anti-parallel
Strand 5
A
111 115parallel
Strand 6
A
194 199parallel
Strand 7
A
221 225parallel
Strand 8
A
319 324parallel
Strand 9
A
418 423parallel
Strand 10
A
501 505parallel
Strand 11
A
512 514anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
294 296parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il