Analysis of interatomic Contacts of Structural Units in PDB entry:
1VP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VP2 entry

There are 2 chains in PDB entry 1VP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 191
B
 LYS 3LEU 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1VP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 21Right-handed alpha
Helix 2
2
A
44 61Right-handed alpha
Helix 3
3
A
75 77Right-handed 310
Helix 4
4
A
80 84Right-handed 310
Helix 5
5
A
92 104Right-handed alpha
Helix 6
6
A
150 152Right-handed 310
Helix 7
7
A
166 168Right-handed 310
Helix 8
8
A
169 174Right-handed alpha
Helix 9
9
A
174 191Right-handed alpha
Helix 10
10
B
12 21Right-handed alpha
Helix 11
11
B
44 61Right-handed alpha
Helix 12
12
B
75 77Right-handed 310
Helix 13
13
B
80 84Right-handed 310
Helix 14
14
B
92 104Right-handed alpha
Helix 15
15
B
150 152Right-handed 310
Helix 16
16
B
166 168Right-handed 310
Helix 17
17
B
169 174Right-handed alpha
Helix 18
18
B
174 191Right-handed alpha
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There are 2 sheets in PDB entry 1VP2. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
4 8parallel
Strand 3
A
64 73parallel
Strand 4
A
110 121anti-parallel
Strand 5
A
126 138anti-parallel
Strand 6
A
154 156anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
4 8parallel
Strand 3
B
64 73parallel
Strand 4
B
110 121anti-parallel
Strand 5
B
126 138anti-parallel
Strand 6
B
154 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il