Analysis of interatomic Contacts of Structural Units in PDB entry:
1VP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VP5 entry

There are 2 chains in PDB entry 1VP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2LYS 285
B
 GLN 2LEU 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1VP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 40Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
52 66Right-handed alpha
Helix 4
4
A
70 74Right-handed 310
Helix 5
5
A
81 85Right-handed 310
Helix 6
6
A
87 102Right-handed alpha
Helix 7
7
A
117 131Right-handed alpha
Helix 8
8
A
143 154Right-handed alpha
Helix 9
9
A
171 181Right-handed alpha
Helix 10
10
A
191 200Right-handed 310
Helix 11
11
A
201 212Right-handed alpha
Helix 12
12
A
214 226Right-handed alpha
Helix 13
13
A
236 245Right-handed alpha
Helix 14
14
A
252 261Right-handed alpha
Helix 15
15
A
274 284Right-handed alpha
Helix 16
16
B
25 40Right-handed alpha
Helix 17
17
B
47 51Right-handed 310
Helix 18
18
B
52 66Right-handed alpha
Helix 19
19
B
70 74Right-handed 310
Helix 20
20
B
81 85Right-handed 310
Helix 21
21
B
87 102Right-handed alpha
Helix 22
22
B
117 131Right-handed alpha
Helix 23
23
B
143 154Right-handed alpha
Helix 24
24
B
171 181Right-handed alpha
Helix 25
25
B
191 200Right-handed 310
Helix 26
26
B
201 212Right-handed alpha
Helix 27
27
B
214 226Right-handed alpha
Helix 28
28
B
236 245Right-handed alpha
Helix 29
29
B
252 261Right-handed alpha
Helix 30
30
B
274 284Right-handed alpha
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There are 4 sheets in PDB entry 1VP5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
13 15anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
43 45parallel
Strand 3
A
75 80parallel
Strand 4
A
106 111parallel
Strand 5
A
134 140parallel
Strand 6
A
160 164parallel
Strand 7
A
184 188parallel
Strand 8
A
229 230parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
13 15anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
43 45parallel
Strand 3
B
75 80parallel
Strand 4
B
106 111parallel
Strand 5
B
134 140parallel
Strand 6
B
160 164parallel
Strand 7
B
184 188parallel
Strand 8
B
229 230parallel
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