Analysis of interatomic Contacts of Structural Units in PDB entry:
1VP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VP6 entry

There are 2 chains in PDB entry 1VP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 218GLY 350
C
 VAL 218GLY 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1VP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
219 231Right-handed alpha
Helix 2
2
A
232 239Right-handed 310
Helix 3
3
A
240 251Right-handed alpha
Helix 4
4
A
297 304Right-handed alpha
Helix 5
5
A
324 334Right-handed alpha
Helix 6
6
A
334 349Right-handed alpha
Helix 7
7
C
219 231Right-handed alpha
Helix 8
8
C
232 239Right-handed 310
Helix 9
9
C
240 251Right-handed alpha
Helix 10
10
C
297 304Right-handed alpha
Helix 11
11
C
324 334Right-handed alpha
Helix 12
12
C
334 350Right-handed alpha
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There are 4 sheets in PDB entry 1VP6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 256first strand
Strand 2
A
317 323anti-parallel
Strand 3
A
271 277anti-parallel
Strand 4
A
295 296anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
311 313anti-parallel
Strand 3
A
280 282anti-parallel
Strand 4
A
288 290anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 256first strand
Strand 2
C
317 323anti-parallel
Strand 3
C
271 277anti-parallel
Strand 4
C
295 296anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
261 263first strand
Strand 2
C
311 313anti-parallel
Strand 3
C
280 282anti-parallel
Strand 4
C
288 290anti-parallel
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