Analysis of interatomic Contacts of Structural Units in PDB entry:
1VP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VP8 entry

There is 1 chain in PDB entry 1VP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ARG 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1VP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 31Right-handed alpha
Helix 3
3
A
42 52Right-handed alpha
Helix 4
4
A
75 85Right-handed alpha
Helix 5
5
A
99 107Right-handed alpha
Helix 6
6
A
111 125Right-handed alpha
Helix 7
7
A
125 141Right-handed alpha
Helix 8
8
A
172 176Right-handed 310
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There is 1 sheet ( A) in PDB entry 1VP8.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
177 185parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
149 153anti-parallel
Strand 5
A
34 38parallel
Strand 6
A
56 61parallel
Strand 7
A
88 91parallel
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