Analysis of interatomic Contacts of Structural Units in PDB entry:
1VPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VPB entry

There is 1 chain in PDB entry 1VPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1VPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 20Right-handed alpha
Helix 2
2
A
74 90Right-handed alpha
Helix 3
3
A
102 106Right-handed 310
Helix 4
4
A
120 124Right-handed 310
Helix 5
5
A
125 139Right-handed alpha
Helix 6
6
A
204 208Right-handed 310
Helix 7
7
A
212 223Right-handed alpha
Helix 8
8
A
243 254Right-handed alpha
Helix 9
9
A
256 262Right-handed alpha
Helix 10
10
A
321 329Right-handed alpha
Helix 11
11
A
348 355Right-handed alpha
Helix 12
12
A
404 410Right-handed alpha
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There are 3 sheets in PDB entry 1VPB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 70first strand
Strand 2
A
46 61anti-parallel
Strand 3
A
24 40anti-parallel
Strand 4
A
147 165anti-parallel
Strand 5
A
169 186anti-parallel
Strand 6
A
195 202anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
429 438anti-parallel
Strand 3
A
390 403anti-parallel
Strand 4
A
376 387anti-parallel
Strand 5
A
358 370anti-parallel
Strand 6
A
233 239parallel
Strand 7
A
429 438anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
307 311anti-parallel
Strand 3
A
282 284anti-parallel
Strand 4
A
340 342anti-parallel
Strand 5
A
424 425parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il