Analysis of interatomic Contacts of Structural Units in PDB entry:
1VPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VPE entry

There is 1 chain in PDB entry 1VPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ALA 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1VPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 8Right-handed 310
Helix 2
2
A
35 49Right-handed alpha
Helix 3
3
A
69 71Right-handed 310
Helix 4
4
A
74 84Right-handed alpha
Helix 5
5
A
97 104Right-handed alpha
Helix 6
6
A
117 119Right-handed 310
Helix 7
7
A
122 125Right-handed alpha
Helix 8
8
A
128 137Right-handed alpha
Helix 9
9
A
146 148Right-handed 310
Helix 10
10
A
158 161Right-handed 310
Helix 11
11
A
169 183Right-handed alpha
Helix 12
12
A
198 211Right-handed alpha
Helix 13
13
A
221 229Right-handed 310
Helix 14
14
A
240 255Right-handed 310
Helix 15
15
A
298 308Right-handed alpha
Helix 16
16
A
326 328Right-handed 310
Helix 17
17
A
330 344Right-handed alpha
Helix 18
18
A
354 362Right-handed alpha
Helix 19
19
A
366 368Right-handed 310
Helix 20
20
A
376 384Right-handed alpha
Helix 21
21
A
389 392Right-handed alpha
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There are 3 sheets in PDB entry 1VPE. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
140 143parallel
Strand 3
A
15 19parallel
Strand 4
A
53 57parallel
Strand 5
A
110 114parallel
Strand 6
A
89 91parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
214 217parallel
Strand 3
A
189 193parallel
Strand 4
A
313 317parallel
Strand 5
A
348 352parallel
Strand 6
A
371 373parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
265 269anti-parallel
Strand 3
A
292 296anti-parallel
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