Analysis of interatomic Contacts of Structural Units in PDB entry:
1VPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VPL entry

There is 1 chain in PDB entry 1VPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LYS 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1VPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 50Right-handed alpha
Helix 2
2
A
70 76Right-handed alpha
Helix 3
3
A
92 105Right-handed alpha
Helix 4
4
A
107 123Right-handed alpha
Helix 5
5
A
124 130Right-handed 310
Helix 6
6
A
131 135Right-handed 310
Helix 7
7
A
136 150Right-handed alpha
Helix 8
8
A
166 183Right-handed alpha
Helix 9
9
A
193 198Right-handed alpha
Helix 10
10
A
218 225Right-handed alpha
Helix 11
11
A
229 239Right-handed alpha
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There are 2 sheets in PDB entry 1VPL. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 26first strand
Strand 2
A
4 13anti-parallel
Strand 3
A
57 62anti-parallel
Strand 4
A
65 66anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
155 159parallel
Strand 3
A
186 191parallel
Strand 4
A
31 35parallel
Strand 5
A
203 208parallel
Strand 6
A
211 217anti-parallel
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