Analysis of interatomic Contacts of Structural Units in PDB entry:
1VPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VPQ entry

There is 1 chain in PDB entry 1VPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLU 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1VPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 26Right-handed 310
Helix 2
2
A
27 35Right-handed alpha
Helix 3
3
A
52 61Right-handed alpha
Helix 4
4
A
74 80Right-handed alpha
Helix 5
5
A
80 85Right-handed alpha
Helix 6
6
A
88 105Right-handed alpha
Helix 7
7
A
122 136Right-handed alpha
Helix 8
8
A
146 150Right-handed 310
Helix 9
9
A
151 161Right-handed alpha
Helix 10
10
A
203 207Right-handed 310
Helix 11
11
A
213 229Right-handed alpha
Helix 12
12
A
241 243Right-handed 310
Helix 13
13
A
244 259Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1VPQ.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 6first strand
Strand 2
A
233 238parallel
Strand 3
A
187 192parallel
Strand 4
A
164 169parallel
Strand 5
A
140 143parallel
Strand 6
A
108 114parallel
Strand 7
A
68 72parallel
Strand 8
A
40 43parallel
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