Analysis of interatomic Contacts of Structural Units in PDB entry:
1VPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VPR entry

There is 1 chain in PDB entry 1VPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 868ASP 1218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1VPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
887 892Right-handed 310
Helix 2
2
A
921 931Right-handed alpha
Helix 3
3
A
951 966Right-handed alpha
Helix 4
4
A
971 977Right-handed alpha
Helix 5
5
A
984 992Right-handed alpha
Helix 6
6
A
1036 1047Right-handed alpha
Helix 7
7
A
1051 1063Right-handed alpha
Helix 8
8
A
1064 1067Right-handed 310
Helix 9
9
A
1185 1190Right-handed alpha
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There are 3 sheets in PDB entry 1VPR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
894 895first strand
Strand 2
A
898 899anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 914first strand
Strand 2
A
917 919anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1094 1098first strand
Strand 2
A
1080 1084anti-parallel
Strand 3
A
1071 1077anti-parallel
Strand 4
A
1028 1034anti-parallel
Strand 5
A
1162 1172anti-parallel
Strand 6
A
1150 1159anti-parallel
Strand 7
A
1137 1147anti-parallel
Strand 8
A
1124 1131anti-parallel
Strand 9
A
1112 1118anti-parallel
Strand 10
A
1102 1106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il