Analysis of interatomic Contacts of Structural Units in PDB entry:
1VPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VPV entry

There are 2 chains in PDB entry 1VPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 287
B
 MSE 1LYS 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1VPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
16 21Right-handed alpha
Helix 3
3
A
43 57Right-handed alpha
Helix 4
4
A
67 81Right-handed alpha
Helix 5
5
A
97 107Right-handed alpha
Helix 6
6
A
121 124Right-handed 310
Helix 7
7
A
125 138Right-handed alpha
Helix 8
8
A
141 155Right-handed alpha
Helix 9
9
A
167 174Right-handed alpha
Helix 10
10
A
208 221Right-handed alpha
Helix 11
11
A
239 252Right-handed alpha
Helix 12
12
A
265 273Right-handed alpha
Helix 13
13
B
10 12Right-handed 310
Helix 14
14
B
16 21Right-handed alpha
Helix 15
15
B
43 57Right-handed alpha
Helix 16
16
B
67 81Right-handed alpha
Helix 17
17
B
97 108Right-handed alpha
Helix 18
18
B
121 124Right-handed 310
Helix 19
19
B
125 138Right-handed alpha
Helix 20
20
B
141 155Right-handed alpha
Helix 21
21
B
167 174Right-handed alpha
Helix 22
22
B
208 222Right-handed alpha
Helix 23
23
B
239 251Right-handed alpha
Helix 24
24
B
265 273Right-handed alpha
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There are 6 sheets in PDB entry 1VPV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
3 8parallel
Strand 3
A
85 90parallel
Strand 4
A
113 117parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
29 31anti-parallel
Strand 3
A
62 64anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 207first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
158 164anti-parallel
Strand 4
A
277 285anti-parallel
Strand 5
A
229 236anti-parallel
Strand 6
A
255 263parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
3 8parallel
Strand 3
B
85 90parallel
Strand 4
B
113 117parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
29 31anti-parallel
Strand 3
B
62 64anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 207first strand
Strand 2
B
189 196anti-parallel
Strand 3
B
158 164anti-parallel
Strand 4
B
277 285anti-parallel
Strand 5
B
229 236anti-parallel
Strand 6
B
255 263parallel
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