Analysis of interatomic Contacts of Structural Units in PDB entry:
1VPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VPY entry

There is 1 chain in PDB entry 1VPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3SER 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1VPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 30Right-handed alpha
Helix 2
2
A
36 41Right-handed alpha
Helix 3
3
A
44 54Right-handed alpha
Helix 4
4
A
74 78Right-handed 310
Helix 5
5
A
81 93Right-handed alpha
Helix 6
6
A
93 98Right-handed alpha
Helix 7
7
A
116 130Right-handed alpha
Helix 8
8
A
141 146Right-handed 310
Helix 9
9
A
149 160Right-handed alpha
Helix 10
10
A
218 234Right-handed alpha
Helix 11
11
A
247 262Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1VPY.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
135 138parallel
Strand 3
A
102 108parallel
Strand 4
A
60 64parallel
Strand 5
A
32 35parallel
Strand 6
A
1 6parallel
Strand 7
A
238 243parallel
Strand 8
A
189 193parallel
Strand 9
A
166 168parallel
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