Analysis of interatomic Contacts of Structural Units in PDB entry:
1VQ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VQ0 entry

There are 2 chains in PDB entry 1VQ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2ASP 287
B
 HIS -2ASP 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1VQ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
33 51Right-handed alpha
Helix 3
3
A
52 54Right-handed 310
Helix 4
4
A
103 109Right-handed alpha
Helix 5
5
A
136 148Right-handed alpha
Helix 6
6
A
181 194Right-handed alpha
Helix 7
7
A
197 202Right-handed alpha
Helix 8
8
A
206 216Right-handed alpha
Helix 9
9
A
234 244Right-handed alpha
Helix 10
10
A
246 257Right-handed alpha
Helix 11
11
A
273 287Right-handed alpha
Helix 12
12
B
19 31Right-handed alpha
Helix 13
13
B
33 51Right-handed alpha
Helix 14
14
B
52 54Right-handed 310
Helix 15
15
B
103 109Right-handed alpha
Helix 16
16
B
136 148Right-handed alpha
Helix 17
17
B
181 194Right-handed alpha
Helix 18
18
B
197 205Right-handed alpha
Helix 19
19
B
206 216Right-handed alpha
Helix 20
20
B
234 244Right-handed alpha
Helix 21
21
B
246 257Right-handed alpha
Helix 22
22
B
274 287Right-handed alpha
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There are 5 sheets in PDB entry 1VQ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 161first strand
Strand 2
A
164 175anti-parallel
Strand 3
A
12 18anti-parallel
Strand 4
A
1 7anti-parallel
Strand 5
A
223 226anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
82 87parallel
Strand 3
A
72 78anti-parallel
Strand 4
A
59 66anti-parallel
Strand 5
A
111 118anti-parallel
Strand 6
A
125 130anti-parallel
Strand 7
B
125 130anti-parallel
Strand 8
B
111 118anti-parallel
Strand 9
B
59 66anti-parallel
Strand 10
B
72 78anti-parallel
Strand 11
B
82 87anti-parallel
Strand 12
B
228 229parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
269 272anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 161first strand
Strand 2
B
164 175anti-parallel
Strand 3
B
12 18anti-parallel
Strand 4
B
1 7anti-parallel
Strand 5
B
223 226anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 262first strand
Strand 2
B
269 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il