Analysis of interatomic Contacts of Structural Units in PDB entry:
1VQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VQQ entry

There are 2 chains in PDB entry 1VQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27GLU 668
B
 ASP 27GLU 668
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 1VQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 39Right-handed alpha
Helix 2
2
A
41 48Right-handed alpha
Helix 3
3
A
50 58Right-handed alpha
Helix 4
4
A
58 64Right-handed alpha
Helix 5
5
A
64 74Right-handed alpha
Helix 6
6
A
128 132Right-handed 310
Helix 7
7
A
174 178Right-handed 310
Helix 8
8
A
182 191Right-handed alpha
Helix 9
9
A
193 202Right-handed alpha
Helix 10
10
A
221 231Right-handed alpha
Helix 11
11
A
245 248Right-handed 310
Helix 12
12
A
249 254Right-handed alpha
Helix 13
13
A
262 270Right-handed 310
Helix 14
14
A
281 287Right-handed alpha
Helix 15
15
A
287 292Right-handed alpha
Helix 16
16
A
329 341Right-handed alpha
Helix 17
17
A
368 374Right-handed alpha
Helix 18
18
A
376 385Right-handed alpha
Helix 19
19
A
401 403Right-handed 310
Helix 20
20
A
404 416Right-handed alpha
Helix 21
21
A
435 439Right-handed 310
Helix 22
22
A
455 461Right-handed alpha
Helix 23
23
A
463 475Right-handed alpha
Helix 24
24
A
475 486Right-handed alpha
Helix 25
25
A
510 519Right-handed alpha
Helix 26
26
A
527 537Right-handed alpha
Helix 27
27
A
538 540Right-handed 310
Helix 28
28
A
564 581Right-handed alpha
Helix 29
29
A
641 657Right-handed alpha
Helix 30
30
A
658 661Right-handed 310
Helix 31
31
B
27 39Right-handed alpha
Helix 32
32
B
41 48Right-handed alpha
Helix 33
33
B
50 58Right-handed alpha
Helix 34
34
B
58 64Right-handed alpha
Helix 35
35
B
64 74Right-handed alpha
Helix 36
36
B
128 132Right-handed 310
Helix 37
37
B
174 178Right-handed 310
Helix 38
38
B
179 181Right-handed 310
Helix 39
39
B
182 191Right-handed alpha
Helix 40
40
B
193 202Right-handed alpha
Helix 41
41
B
221 231Right-handed alpha
Helix 42
42
B
245 248Right-handed 310
Helix 43
43
B
249 254Right-handed alpha
Helix 44
44
B
260 266Right-handed alpha
Helix 45
45
B
267 270Right-handed 310
Helix 46
46
B
282 287Right-handed alpha
Helix 47
47
B
287 292Right-handed alpha
Helix 48
48
B
329 341Right-handed alpha
Helix 49
49
B
368 374Right-handed alpha
Helix 50
50
B
376 385Right-handed alpha
Helix 51
51
B
401 403Right-handed 310
Helix 52
52
B
404 416Right-handed alpha
Helix 53
53
B
435 439Right-handed 310
Helix 54
54
B
455 461Right-handed alpha
Helix 55
55
B
463 486Right-handed alpha
Helix 56
56
B
510 518Right-handed alpha
Helix 57
57
B
527 537Right-handed alpha
Helix 58
58
B
538 540Right-handed 310
Helix 59
59
B
564 581Right-handed alpha
Helix 60
60
B
583 588Right-handed alpha
Helix 61
61
B
642 657Right-handed alpha
Helix 62
62
B
658 661Right-handed 310
Back to top of page

There are 20 sheets in PDB entry 1VQQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 89first strand
Strand 2
A
92 103anti-parallel
Strand 3
A
106 118anti-parallel
Strand 4
A
123 125anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 147first strand
Strand 2
A
296 303anti-parallel
Strand 3
A
309 316anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 242first strand
Strand 2
A
161 173anti-parallel
Strand 3
A
154 155anti-parallel
Strand 4
A
324 325parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 242first strand
Strand 2
A
161 173anti-parallel
Strand 3
A
212 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
277 279anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 363first strand
Strand 2
A
345 350anti-parallel
Strand 3
A
628 634anti-parallel
Strand 4
A
613 621anti-parallel
Strand 5
A
594 602anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
451 454anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
443 444anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 545first strand
Strand 2
A
557 559anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 85first strand
Strand 2
B
95 103anti-parallel
Strand 3
B
106 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
122 125anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 147first strand
Strand 2
B
296 303anti-parallel
Strand 3
B
309 316anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 242first strand
Strand 2
B
161 173anti-parallel
Strand 3
B
154 155anti-parallel
Strand 4
B
324 325parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 242first strand
Strand 2
B
161 173anti-parallel
Strand 3
B
212 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 258first strand
Strand 2
B
277 281anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 363first strand
Strand 2
B
344 350anti-parallel
Strand 3
B
628 634anti-parallel
Strand 4
B
613 621anti-parallel
Strand 5
B
594 597anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 363first strand
Strand 2
B
344 350anti-parallel
Strand 3
B
628 634anti-parallel
Strand 4
B
613 621anti-parallel
Strand 5
B
600 602anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 427first strand
Strand 2
B
451 454anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 432first strand
Strand 2
B
443 444anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
544 545first strand
Strand 2
B
557 559anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il