Analysis of interatomic Contacts of Structural Units in PDB entry:
1VQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VQR entry

There are 4 chains in PDB entry 1VQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ASP 285
B
 MSE 5LEU 281
C
 MSE 1LEU 281
D
 MSE 5LEU 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 74 helices in PDB entry 1VQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 13Right-handed alpha
Helix 2
2
A
19 33Right-handed alpha
Helix 3
3
A
38 48Right-handed alpha
Helix 4
4
A
49 61Right-handed alpha
Helix 5
5
A
62 66Right-handed 310
Helix 6
6
A
73 82Right-handed alpha
Helix 7
7
A
82 92Right-handed alpha
Helix 8
8
A
103 107Right-handed 310
Helix 9
9
A
109 129Right-handed alpha
Helix 10
10
A
132 160Right-handed alpha
Helix 11
11
A
162 174Right-handed alpha
Helix 12
12
A
175 184Right-handed alpha
Helix 13
13
A
187 199Right-handed alpha
Helix 14
14
A
202 211Right-handed alpha
Helix 15
15
A
214 218Right-handed 310
Helix 16
16
A
222 237Right-handed alpha
Helix 17
17
A
243 260Right-handed alpha
Helix 18
18
A
265 273Right-handed alpha
Helix 19
19
A
274 281Right-handed alpha
Helix 20
20
B
5 13Right-handed alpha
Helix 21
21
B
19 30Right-handed alpha
Helix 22
22
B
38 48Right-handed alpha
Helix 23
23
B
49 61Right-handed alpha
Helix 24
24
B
62 66Right-handed 310
Helix 25
25
B
73 91Right-handed alpha
Helix 26
26
B
103 107Right-handed 310
Helix 27
27
B
109 129Right-handed alpha
Helix 28
28
B
132 160Right-handed alpha
Helix 29
29
B
162 174Right-handed alpha
Helix 30
30
B
175 184Right-handed alpha
Helix 31
31
B
187 199Right-handed alpha
Helix 32
32
B
202 211Right-handed alpha
Helix 33
33
B
214 218Right-handed 310
Helix 34
34
B
222 237Right-handed alpha
Helix 35
35
B
243 260Right-handed alpha
Helix 36
36
B
265 273Right-handed alpha
Helix 37
37
B
274 281Right-handed alpha
Helix 38
38
C
3 13Right-handed alpha
Helix 39
39
C
19 33Right-handed alpha
Helix 40
40
C
38 48Right-handed alpha
Helix 41
41
C
49 61Right-handed alpha
Helix 42
42
C
62 66Right-handed 310
Helix 43
43
C
73 92Right-handed alpha
Helix 44
44
C
103 107Right-handed 310
Helix 45
45
C
109 129Right-handed alpha
Helix 46
46
C
132 160Right-handed alpha
Helix 47
47
C
162 172Right-handed alpha
Helix 48
48
C
175 184Right-handed alpha
Helix 49
49
C
187 199Right-handed alpha
Helix 50
50
C
202 211Right-handed alpha
Helix 51
51
C
214 218Right-handed 310
Helix 52
52
C
219 237Right-handed alpha
Helix 53
53
C
243 259Right-handed alpha
Helix 54
54
C
265 273Right-handed alpha
Helix 55
55
C
274 281Right-handed alpha
Helix 56
56
D
5 13Right-handed alpha
Helix 57
57
D
19 30Right-handed alpha
Helix 58
58
D
38 48Right-handed alpha
Helix 59
59
D
49 61Right-handed alpha
Helix 60
60
D
62 66Right-handed 310
Helix 61
61
D
73 82Right-handed alpha
Helix 62
62
D
82 91Right-handed alpha
Helix 63
63
D
103 107Right-handed 310
Helix 64
64
D
109 129Right-handed alpha
Helix 65
65
D
132 160Right-handed alpha
Helix 66
66
D
162 173Right-handed alpha
Helix 67
67
D
175 184Right-handed alpha
Helix 68
68
D
187 199Right-handed alpha
Helix 69
69
D
202 211Right-handed alpha
Helix 70
70
D
214 218Right-handed 310
Helix 71
71
D
219 237Right-handed alpha
Helix 72
72
D
243 260Right-handed alpha
Helix 73
73
D
265 273Right-handed alpha
Helix 74
74
D
274 281Right-handed alpha
Back to top of page
There are no sheets in PDB entry 1VQR
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il