Analysis of interatomic Contacts of Structural Units in PDB entry:
1VQT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VQT entry

There is 1 chain in PDB entry 1VQT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1GLU 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1VQT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 20Right-handed alpha
Helix 2
2
A
28 33Right-handed alpha
Helix 3
3
A
36 44Right-handed alpha
Helix 4
4
A
58 70Right-handed alpha
Helix 5
5
A
84 95Right-handed alpha
Helix 6
6
A
111 125Right-handed alpha
Helix 7
7
A
132 140Right-handed alpha
Helix 8
8
A
167 171Right-handed alpha
Helix 9
9
A
180 185Right-handed alpha
Helix 10
10
A
188 197Right-handed alpha
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There are 2 sheets in PDB entry 1VQT. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
24 27parallel
Strand 3
A
48 55parallel
Strand 4
A
74 80parallel
Strand 5
A
98 102parallel
Strand 6
A
128 130parallel
Strand 7
A
147 149parallel
Strand 8
A
176 179parallel
Strand 9
A
2 6parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
165 166parallel
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