Analysis of interatomic Contacts of Structural Units in PDB entry:
1VQU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VQU entry

There are 2 chains in PDB entry 1VQU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 13ASN 362
B
 SER 14ASN 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 1VQU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 24Right-handed alpha
Helix 2
2
A
29 42Right-handed alpha
Helix 3
3
A
46 61Right-handed alpha
Helix 4
4
A
63 76Right-handed alpha
Helix 5
5
A
113 125Right-handed alpha
Helix 6
6
A
142 150Right-handed alpha
Helix 7
7
A
157 168Right-handed alpha
Helix 8
8
A
179 184Right-handed 310
Helix 9
9
A
185 193Right-handed alpha
Helix 10
10
A
196 202Right-handed alpha
Helix 11
11
A
203 205Right-handed 310
Helix 12
12
A
219 221Right-handed 310
Helix 13
13
A
222 233Right-handed alpha
Helix 14
14
A
272 277Right-handed 310
Helix 15
15
A
282 287Right-handed 310
Helix 16
16
A
290 303Right-handed alpha
Helix 17
17
A
307 325Right-handed alpha
Helix 18
18
A
332 347Right-handed alpha
Helix 19
19
A
347 362Right-handed alpha
Helix 20
20
B
15 24Right-handed alpha
Helix 21
21
B
29 42Right-handed alpha
Helix 22
22
B
46 61Right-handed alpha
Helix 23
23
B
63 77Right-handed alpha
Helix 24
24
B
113 125Right-handed alpha
Helix 25
25
B
142 151Right-handed alpha
Helix 26
26
B
157 168Right-handed alpha
Helix 27
27
B
182 193Right-handed alpha
Helix 28
28
B
197 202Right-handed alpha
Helix 29
29
B
203 205Right-handed 310
Helix 30
30
B
219 221Right-handed 310
Helix 31
31
B
222 233Right-handed alpha
Helix 32
32
B
282 287Right-handed 310
Helix 33
33
B
290 303Right-handed alpha
Helix 34
34
B
307 325Right-handed alpha
Helix 35
35
B
332 347Right-handed alpha
Helix 36
36
B
347 361Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1VQU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
212 216parallel
Strand 3
A
237 243parallel
Strand 4
A
256 262anti-parallel
Strand 5
A
265 271anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
170 175parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 103first strand
Strand 2
B
212 216parallel
Strand 3
B
237 243parallel
Strand 4
B
256 262anti-parallel
Strand 5
B
265 271anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 132first strand
Strand 2
B
170 173parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il