Analysis of interatomic Contacts of Structural Units in PDB entry:
1VQZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VQZ entry

There is 1 chain in PDB entry 1VQZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLY 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1VQZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 25Right-handed alpha
Helix 2
2
A
48 52Right-handed 310
Helix 3
3
A
54 62Right-handed alpha
Helix 4
4
A
97 112Right-handed alpha
Helix 5
5
A
156 162Right-handed alpha
Helix 6
6
A
183 187Right-handed 310
Helix 7
7
A
193 209Right-handed alpha
Helix 8
8
A
218 232Right-handed alpha
Helix 9
9
A
235 240Right-handed alpha
Helix 10
10
A
285 293Right-handed alpha
Helix 11
11
A
298 307Right-handed alpha
Helix 12
12
A
308 309Right-handed 310
Helix 13
13
A
310 314Right-handed 310
Helix 14
14
A
319 328Right-handed alpha
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There are 3 sheets in PDB entry 1VQZ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
123 126anti-parallel
Strand 3
A
129 139anti-parallel
Strand 4
A
142 150anti-parallel
Strand 5
A
81 89anti-parallel
Strand 6
A
30 35anti-parallel
Strand 7
A
1 5parallel
Strand 8
A
213 214parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
40 43parallel
Strand 3
A
75 77anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
248 254parallel
Strand 3
A
257 266anti-parallel
Strand 4
A
269 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il