Analysis of interatomic Contacts of Structural Units in PDB entry:
1VR0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VR0 entry

There are 3 chains in PDB entry 1VR0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LEU 235
B
 MSE 1LEU 235
C
 HIS -1LEU 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1VR0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
13 17Right-handed 310
Helix 3
3
A
29 40Right-handed alpha
Helix 4
4
A
50 62Right-handed alpha
Helix 5
5
A
84 88Right-handed 310
Helix 6
6
A
89 94Right-handed alpha
Helix 7
7
A
104 112Right-handed alpha
Helix 8
8
A
125 137Right-handed alpha
Helix 9
9
A
152 170Right-handed alpha
Helix 10
10
A
176 188Right-handed alpha
Helix 11
11
A
192 197Right-handed alpha
Helix 12
12
A
199 208Right-handed alpha
Helix 13
13
A
210 218Right-handed alpha
Helix 14
14
B
8 12Right-handed 310
Helix 15
15
B
13 17Right-handed 310
Helix 16
16
B
29 40Right-handed alpha
Helix 17
17
B
50 62Right-handed alpha
Helix 18
18
B
84 88Right-handed 310
Helix 19
19
B
89 94Right-handed alpha
Helix 20
20
B
104 112Right-handed alpha
Helix 21
21
B
125 137Right-handed alpha
Helix 22
22
B
152 170Right-handed alpha
Helix 23
23
B
176 188Right-handed alpha
Helix 24
24
B
192 197Right-handed alpha
Helix 25
25
B
199 208Right-handed alpha
Helix 26
26
B
210 218Right-handed alpha
Helix 27
27
C
8 12Right-handed 310
Helix 28
28
C
13 18Right-handed alpha
Helix 29
29
C
29 40Right-handed alpha
Helix 30
30
C
50 62Right-handed alpha
Helix 31
31
C
84 88Right-handed 310
Helix 32
32
C
89 94Right-handed alpha
Helix 33
33
C
104 112Right-handed alpha
Helix 34
34
C
125 137Right-handed alpha
Helix 35
35
C
152 170Right-handed alpha
Helix 36
36
C
176 188Right-handed alpha
Helix 37
37
C
192 197Right-handed alpha
Helix 38
38
C
199 208Right-handed alpha
Helix 39
39
C
210 218Right-handed alpha
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There are 6 sheets in PDB entry 1VR0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
1 6parallel
Strand 3
A
140 144parallel
Strand 4
A
21 25parallel
Strand 5
A
117 121parallel
Strand 6
A
228 230anti-parallel
Strand 7
A
233 235anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
97 101parallel
Strand 3
A
65 69parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
2 6parallel
Strand 3
B
140 144parallel
Strand 4
B
21 25parallel
Strand 5
B
117 121parallel
Strand 6
B
228 230anti-parallel
Strand 7
B
233 235anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 47first strand
Strand 2
B
97 101parallel
Strand 3
B
65 69parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 175first strand
Strand 2
C
1 6parallel
Strand 3
C
140 144parallel
Strand 4
C
21 25parallel
Strand 5
C
117 121parallel
Strand 6
C
228 230anti-parallel
Strand 7
C
233 235anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 47first strand
Strand 2
C
97 101parallel
Strand 3
C
65 69parallel
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