Analysis of interatomic Contacts of Structural Units in PDB entry:
1VR5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VR5 entry

There are 2 chains in PDB entry 1VR5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LYS 557
B
 HIS 0LYS 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 1VR5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 25Right-handed 310
Helix 2
2
A
104 118Right-handed alpha
Helix 3
3
A
123 128Right-handed 310
Helix 4
4
A
149 160Right-handed alpha
Helix 5
5
A
164 169Right-handed alpha
Helix 6
6
A
172 179Right-handed alpha
Helix 7
7
A
208 215Right-handed alpha
Helix 8
8
A
230 240Right-handed alpha
Helix 9
9
A
252 260Right-handed alpha
Helix 10
10
A
291 302Right-handed alpha
Helix 11
11
A
303 311Right-handed alpha
Helix 12
12
A
327 332Right-handed alpha
Helix 13
13
A
335 343Right-handed alpha
Helix 14
14
A
347 358Right-handed alpha
Helix 15
15
A
387 403Right-handed alpha
Helix 16
16
A
414 425Right-handed alpha
Helix 17
17
A
441 451Right-handed alpha
Helix 18
18
A
452 456Right-handed 310
Helix 19
19
A
470 482Right-handed alpha
Helix 20
20
A
485 504Right-handed alpha
Helix 21
21
A
542 548Right-handed 310
Helix 22
22
A
549 554Right-handed alpha
Helix 23
23
B
23 25Right-handed 310
Helix 24
24
B
45 49Right-handed 310
Helix 25
25
B
104 118Right-handed alpha
Helix 26
26
B
123 128Right-handed 310
Helix 27
27
B
149 160Right-handed alpha
Helix 28
28
B
164 169Right-handed alpha
Helix 29
29
B
172 179Right-handed alpha
Helix 30
30
B
208 215Right-handed alpha
Helix 31
31
B
230 240Right-handed alpha
Helix 32
32
B
252 260Right-handed alpha
Helix 33
33
B
291 302Right-handed alpha
Helix 34
34
B
303 311Right-handed alpha
Helix 35
35
B
327 332Right-handed alpha
Helix 36
36
B
335 343Right-handed alpha
Helix 37
37
B
347 359Right-handed alpha
Helix 38
38
B
387 404Right-handed alpha
Helix 39
39
B
414 425Right-handed alpha
Helix 40
40
B
442 451Right-handed alpha
Helix 41
41
B
452 455Right-handed 310
Helix 42
42
B
470 482Right-handed alpha
Helix 43
43
B
485 504Right-handed alpha
Helix 44
44
B
542 548Right-handed 310
Helix 45
45
B
549 554Right-handed alpha
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There are 10 sheets in PDB entry 1VR5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 196first strand
Strand 2
A
199 204anti-parallel
Strand 3
A
222 226anti-parallel
Strand 4
A
27 31parallel
Strand 5
A
245 246parallel
Strand 6
A
517 518anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
70 73anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 83first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
140 145anti-parallel
Strand 4
A
130 137anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
506 514anti-parallel
Strand 3
A
273 282anti-parallel
Strand 4
A
429 432anti-parallel
Strand 5
A
379 382parallel
Strand 6
A
408 411parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 524first strand
Strand 2
A
555 556anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 196first strand
Strand 2
B
199 204anti-parallel
Strand 3
B
222 226anti-parallel
Strand 4
B
27 31parallel
Strand 5
B
245 246parallel
Strand 6
B
517 518anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 65first strand
Strand 2
B
70 73anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 83first strand
Strand 2
B
86 91anti-parallel
Strand 3
B
140 145anti-parallel
Strand 4
B
130 137anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 318first strand
Strand 2
B
506 514anti-parallel
Strand 3
B
273 282anti-parallel
Strand 4
B
429 432anti-parallel
Strand 5
B
379 382parallel
Strand 6
B
408 411parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
523 524first strand
Strand 2
B
555 556anti-parallel
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