Analysis of interatomic Contacts of Structural Units in PDB entry:
1VR6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1VR6 entry

There are 4 chains in PDB entry 1VR6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -4	ASN 338
B	HIS -3	ASN 338
C	HIS -4	ASN 338
D	HIS -2	ASN 338

There are 60 helices in PDB entry 1VR6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	10	24	Right-handed alpha
Helix 2	2	A	49	55	Right-handed alpha
Helix 3	3	A	106	120	Right-handed alpha
Helix 4	4	A	143	158	Right-handed alpha
Helix 5	5	A	167	169	Right-handed 310
Helix 6	6	A	170	178	Right-handed alpha
Helix 7	7	A	184	188	Right-handed 310
Helix 8	8	A	190	199	Right-handed alpha
Helix 9	9	A	213	227	Right-handed alpha
Helix 10	10	A	253	262	Right-handed alpha
Helix 11	11	A	269	275	Right-handed alpha
Helix 12	12	A	276	278	Right-handed 310
Helix 13	13	A	279	291	Right-handed alpha
Helix 14	14	A	302	306	Right-handed 310
Helix 15	15	A	309	313	Right-handed 310
Helix 16	16	A	315	334	Right-handed alpha
Helix 17	17	B	10	24	Right-handed alpha
Helix 18	18	B	49	55	Right-handed alpha
Helix 19	19	B	106	120	Right-handed alpha
Helix 20	20	B	143	158	Right-handed alpha
Helix 21	21	B	170	178	Right-handed alpha
Helix 22	22	B	185	188	Right-handed 310
Helix 23	23	B	190	200	Right-handed alpha
Helix 24	24	B	213	226	Right-handed alpha
Helix 25	25	B	253	262	Right-handed alpha
Helix 26	26	B	276	278	Right-handed 310
Helix 27	27	B	279	291	Right-handed alpha
Helix 28	28	B	302	306	Right-handed 310
Helix 29	29	B	309	313	Right-handed 310
Helix 30	30	B	315	334	Right-handed alpha
Helix 31	31	C	10	24	Right-handed alpha
Helix 32	32	C	49	55	Right-handed alpha
Helix 33	33	C	106	120	Right-handed alpha
Helix 34	34	C	143	158	Right-handed alpha
Helix 35	35	C	167	169	Right-handed 310
Helix 36	36	C	170	178	Right-handed alpha
Helix 37	37	C	184	188	Right-handed 310
Helix 38	38	C	190	199	Right-handed alpha
Helix 39	39	C	213	226	Right-handed alpha
Helix 40	40	C	253	262	Right-handed alpha
Helix 41	41	C	269	275	Right-handed alpha
Helix 42	42	C	276	278	Right-handed 310
Helix 43	43	C	279	291	Right-handed alpha
Helix 44	44	C	302	306	Right-handed 310
Helix 45	45	C	309	313	Right-handed 310
Helix 46	46	C	315	334	Right-handed alpha
Helix 47	47	D	10	24	Right-handed alpha
Helix 48	48	D	49	55	Right-handed alpha
Helix 49	49	D	106	120	Right-handed alpha
Helix 50	50	D	143	157	Right-handed alpha
Helix 51	51	D	170	178	Right-handed alpha
Helix 52	52	D	184	188	Right-handed 310
Helix 53	53	D	190	199	Right-handed alpha
Helix 54	54	D	213	227	Right-handed alpha
Helix 55	55	D	253	262	Right-handed alpha
Helix 56	56	D	276	278	Right-handed 310
Helix 57	57	D	279	291	Right-handed alpha
Helix 58	58	D	302	306	Right-handed 310
Helix 59	59	D	309	313	Right-handed 310
Helix 60	60	D	315	334	Right-handed alpha

There are 12 sheets in PDB entry 1VR6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	32	first strand
Strand 2	A	37	45	anti-parallel
Strand 3	A	-3	5	anti-parallel
Strand 4	A	59	64	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	89	90	anti-parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	A	94	100	parallel
Strand 3	A	294	298	parallel
Strand 4	A	266	268	parallel
Strand 5	A	232	236	parallel
Strand 6	A	204	207	parallel
Strand 7	A	180	183	parallel
Strand 8	A	160	164	parallel
Strand 9	A	124	126	parallel
Strand 10	A	94	100	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	32	first strand
Strand 2	B	37	44	anti-parallel
Strand 3	B	-2	5	anti-parallel
Strand 4	B	59	64	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	89	90	anti-parallel

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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	338	first strand
Strand 2	B	94	100	parallel
Strand 3	B	294	298	parallel
Strand 4	B	266	268	parallel
Strand 5	B	232	236	parallel
Strand 6	B	204	207	parallel
Strand 7	B	180	183	parallel
Strand 8	B	160	165	parallel
Strand 9	B	124	126	parallel
Strand 10	B	94	100	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	32	first strand
Strand 2	C	37	44	anti-parallel
Strand 3	C	-2	5	anti-parallel
Strand 4	C	59	64	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	89	90	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	338	first strand
Strand 2	C	94	100	parallel
Strand 3	C	294	298	parallel
Strand 4	C	266	268	parallel
Strand 5	C	232	236	parallel
Strand 6	C	204	207	parallel
Strand 7	C	180	183	parallel
Strand 8	C	160	164	parallel
Strand 9	C	124	126	parallel
Strand 10	C	94	100	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	32	first strand
Strand 2	D	37	43	anti-parallel
Strand 3	D	-1	5	anti-parallel
Strand 4	D	59	64	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	84	first strand
Strand 2	D	89	90	anti-parallel

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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	338	first strand
Strand 2	D	94	100	parallel
Strand 3	D	294	298	parallel
Strand 4	D	266	268	parallel
Strand 5	D	232	236	parallel
Strand 6	D	204	207	parallel
Strand 7	D	180	183	parallel
Strand 8	D	160	164	parallel
Strand 9	D	124	126	parallel
Strand 10	D	94	100	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1VR6

Analysis of interatomic Contacts of Structural Units in PDB entry:
1VR6