Analysis of interatomic Contacts of Structural Units in PDB entry:
1VRB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VRB entry

There are 4 chains in PDB entry 1VRB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8THR 326
B
 VAL 8THR 326
C
 VAL 8THR 326
D
 SER 7THR 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 1VRB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
17 25Right-handed alpha
Helix 3
3
A
36 43Right-handed 310
Helix 4
4
A
46 50Right-handed 310
Helix 5
5
A
51 59Right-handed alpha
Helix 6
6
A
84 94Right-handed alpha
Helix 7
7
A
102 107Right-handed 310
Helix 8
8
A
108 121Right-handed alpha
Helix 9
9
A
186 193Right-handed alpha
Helix 10
10
A
243 257Right-handed alpha
Helix 11
11
A
258 264Right-handed 310
Helix 12
12
A
273 297Right-handed alpha
Helix 13
13
A
299 305Right-handed alpha
Helix 14
14
A
312 326Right-handed alpha
Helix 15
15
B
9 14Right-handed alpha
Helix 16
16
B
18 25Right-handed alpha
Helix 17
17
B
36 43Right-handed 310
Helix 18
18
B
45 50Right-handed 310
Helix 19
19
B
51 59Right-handed alpha
Helix 20
20
B
67 72Right-handed alpha
Helix 21
21
B
87 94Right-handed alpha
Helix 22
22
B
102 106Right-handed 310
Helix 23
23
B
107 121Right-handed alpha
Helix 24
24
B
188 192Right-handed 310
Helix 25
25
B
243 257Right-handed alpha
Helix 26
26
B
259 264Right-handed alpha
Helix 27
27
B
273 297Right-handed alpha
Helix 28
28
B
299 306Right-handed alpha
Helix 29
29
B
307 309Right-handed 310
Helix 30
30
B
312 325Right-handed alpha
Helix 31
31
C
9 14Right-handed alpha
Helix 32
32
C
18 25Right-handed alpha
Helix 33
33
C
36 43Right-handed 310
Helix 34
34
C
45 50Right-handed 310
Helix 35
35
C
51 59Right-handed alpha
Helix 36
36
C
85 87Right-handed 310
Helix 37
37
C
88 93Right-handed alpha
Helix 38
38
C
102 106Right-handed 310
Helix 39
39
C
107 121Right-handed alpha
Helix 40
40
C
186 191Right-handed alpha
Helix 41
41
C
243 257Right-handed alpha
Helix 42
42
C
259 264Right-handed alpha
Helix 43
43
C
268 272Right-handed 310
Helix 44
44
C
273 298Right-handed alpha
Helix 45
45
C
299 306Right-handed alpha
Helix 46
46
C
307 309Right-handed 310
Helix 47
47
C
312 324Right-handed alpha
Helix 48
48
D
9 14Right-handed alpha
Helix 49
49
D
17 25Right-handed alpha
Helix 50
50
D
36 43Right-handed 310
Helix 51
51
D
46 50Right-handed 310
Helix 52
52
D
51 59Right-handed alpha
Helix 53
53
D
67 74Right-handed alpha
Helix 54
54
D
84 94Right-handed alpha
Helix 55
55
D
103 107Right-handed 310
Helix 56
56
D
108 121Right-handed alpha
Helix 57
57
D
186 191Right-handed alpha
Helix 58
58
D
243 258Right-handed alpha
Helix 59
59
D
259 263Right-handed 310
Helix 60
60
D
274 297Right-handed alpha
Helix 61
61
D
299 306Right-handed alpha
Helix 62
62
D
312 324Right-handed alpha
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There are 11 sheets in PDB entry 1VRB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
215 218anti-parallel
Strand 3
A
150 157anti-parallel
Strand 4
A
232 239anti-parallel
Strand 5
A
129 136anti-parallel
Strand 6
A
98 100anti-parallel
Strand 7
A
63 65anti-parallel
Strand 8
A
81 83anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
177 178anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
223 227anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
215 218anti-parallel
Strand 3
B
150 157anti-parallel
Strand 4
B
232 239anti-parallel
Strand 5
B
129 136anti-parallel
Strand 6
B
97 100anti-parallel
Strand 7
B
63 66anti-parallel
Strand 8
B
81 83anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
140 146anti-parallel
Strand 3
B
223 228anti-parallel
Strand 4
B
160 165anti-parallel
Strand 5
B
206 210anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 33first strand
Strand 2
C
215 218anti-parallel
Strand 3
C
150 157anti-parallel
Strand 4
C
233 239anti-parallel
Strand 5
C
129 135anti-parallel
Strand 6
C
98 100anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
82 83anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
C
142 146anti-parallel
Strand 3
C
223 227anti-parallel
Strand 4
C
160 165anti-parallel
Strand 5
C
206 210anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 33first strand
Strand 2
D
215 218anti-parallel
Strand 3
D
150 157anti-parallel
Strand 4
D
232 239anti-parallel
Strand 5
D
129 136anti-parallel
Strand 6
D
97 101anti-parallel
Strand 7
D
63 66anti-parallel
Strand 8
D
80 83anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 146first strand
Strand 2
D
177 178anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
206 210first strand
Strand 2
D
160 165anti-parallel
Strand 3
D
223 227anti-parallel
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