Analysis of interatomic Contacts of Structural Units in PDB entry:
1VRC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VRC entry

There are 4 chains in PDB entry 1VRC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 130
B
 THR 2LYS 130
C
 MET 201GLU 285
D
 MET 201GLU 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1VRC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 26Right-handed alpha
Helix 2
2
A
41 54Right-handed alpha
Helix 3
3
A
71 82Right-handed alpha
Helix 4
4
A
94 106Right-handed alpha
Helix 5
5
A
110 125Right-handed alpha
Helix 6
6
B
12 26Right-handed alpha
Helix 7
7
B
41 54Right-handed alpha
Helix 8
8
B
71 82Right-handed alpha
Helix 9
9
B
94 106Right-handed alpha
Helix 10
10
B
110 125Right-handed alpha
Helix 11
11
C
215 227Right-handed alpha
Helix 12
12
C
246 251Right-handed alpha
Helix 13
13
C
269 284Right-handed alpha
Helix 14
14
D
215 227Right-handed alpha
Helix 15
15
D
246 251Right-handed alpha
Helix 16
16
D
269 284Right-handed alpha
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There are 4 sheets in PDB entry 1VRC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
4 8parallel
Strand 3
A
62 66parallel
Strand 4
A
87 91parallel
Strand 5
B
127 128anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
B
87 91anti-parallel
Strand 3
B
62 66parallel
Strand 4
B
4 8parallel
Strand 5
B
31 34parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 207first strand
Strand 2
C
260 266anti-parallel
Strand 3
C
232 237anti-parallel
Strand 4
C
240 243anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
202 207first strand
Strand 2
D
260 266anti-parallel
Strand 3
D
232 237anti-parallel
Strand 4
D
240 243anti-parallel
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