Analysis of interatomic Contacts of Structural Units in PDB entry:
1VRL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VRL entry

There are 5 chains in PDB entry 1VRL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A 1 C 5
B
 T 7 C 11
C
 G 13 DA 17
C
 DG 19 T 22
A
 PRO 9SER 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1VRL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 25Right-handed alpha
Helix 2
2
A
28 32Right-handed 310
Helix 3
3
A
35 46Right-handed alpha
Helix 4
4
A
50 65Right-handed alpha
Helix 5
5
A
67 74Right-handed alpha
Helix 6
6
A
75 84Right-handed alpha
Helix 7
7
A
89 107Right-handed alpha
Helix 8
8
A
113 119Right-handed alpha
Helix 9
9
A
124 137Right-handed alpha
Helix 10
10
A
144 155Right-handed alpha
Helix 11
11
A
163 178Right-handed alpha
Helix 12
12
A
182 197Right-handed alpha
Helix 13
13
A
204 208Right-handed 310
Helix 14
14
A
214 219Right-handed alpha
Helix 15
15
A
221 225Right-handed 310
Helix 16
16
A
277 286Right-handed alpha
Helix 17
17
A
337 342Right-handed 310
Helix 18
18
A
345 359Right-handed alpha
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There are 3 sheets in PDB entry 1VRL. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
235 245anti-parallel
Strand 3
A
310 321parallel
Strand 4
A
294 296anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
235 245anti-parallel
Strand 3
A
310 321parallel
Strand 4
A
301 306anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
250 255anti-parallel
Strand 3
A
331 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il