Analysis of interatomic Contacts of Structural Units in PDB entry:
1VRP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VRP entry

There are 2 chains in PDB entry 1VRP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12LYS 381
B
 ASN 8LYS 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1VRP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
28 34Right-handed alpha
Helix 3
3
A
35 43Right-handed alpha
Helix 4
4
A
52 63Right-handed alpha
Helix 5
5
A
80 85Right-handed alpha
Helix 6
6
A
85 97Right-handed alpha
Helix 7
7
A
111 115Right-handed 310
Helix 8
8
A
147 163Right-handed alpha
Helix 9
9
A
164 165Right-handed 310
Helix 10
10
A
166 169Right-handed 310
Helix 11
11
A
177 179Right-handed 310
Helix 12
12
A
180 190Right-handed alpha
Helix 13
13
A
199 204Right-handed alpha
Helix 14
14
A
245 267Right-handed alpha
Helix 15
15
A
283 287Right-handed 310
Helix 16
16
A
301 305Right-handed 310
Helix 17
17
A
307 316Right-handed alpha
Helix 18
18
A
345 369Right-handed alpha
Helix 19
19
A
373 377Right-handed 310
Helix 20
20
B
10 14Right-handed 310
Helix 21
21
B
15 20Right-handed alpha
Helix 22
22
B
28 34Right-handed alpha
Helix 23
23
B
35 43Right-handed alpha
Helix 24
24
B
52 63Right-handed alpha
Helix 25
25
B
80 85Right-handed alpha
Helix 26
26
B
85 97Right-handed alpha
Helix 27
27
B
111 115Right-handed 310
Helix 28
28
B
147 163Right-handed alpha
Helix 29
29
B
164 165Right-handed 310
Helix 30
30
B
166 169Right-handed 310
Helix 31
31
B
177 179Right-handed 310
Helix 32
32
B
180 190Right-handed alpha
Helix 33
33
B
199 205Right-handed alpha
Helix 34
34
B
245 267Right-handed alpha
Helix 35
35
B
283 287Right-handed 310
Helix 36
36
B
301 305Right-handed 310
Helix 37
37
B
307 316Right-handed alpha
Helix 38
38
B
345 369Right-handed alpha
Helix 39
39
B
373 377Right-handed 310
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There are 4 sheets in PDB entry 1VRP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
216 220anti-parallel
Strand 3
A
225 229anti-parallel
Strand 4
A
235 242anti-parallel
Strand 5
A
126 135anti-parallel
Strand 6
A
292 298anti-parallel
Strand 7
A
333 338anti-parallel
Strand 8
A
317 321anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
278 279anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
216 220anti-parallel
Strand 3
B
225 229anti-parallel
Strand 4
B
235 242anti-parallel
Strand 5
B
126 135anti-parallel
Strand 6
B
292 298anti-parallel
Strand 7
B
333 338anti-parallel
Strand 8
B
317 320anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
278 279anti-parallel
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