Analysis of interatomic Contacts of Structural Units in PDB entry:
1VRS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VRS entry

There are 6 chains in PDB entry 1VRS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 1ASN 125
D
HIS 428GLN 545
B
GLY 1ASN 125
E
GLN 426ASP 543
C
SER 9GLU 121
F
HIS 428GLN 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1VRS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
13 17Right-handed alpha
Helix 2
2
A
44 46Right-handed 310
Helix 3
3
D
436 447Right-handed alpha
Helix 4
4
D
461 471Right-handed alpha
Helix 5
5
D
474 481Right-handed alpha
Helix 6
6
D
495 506Right-handed alpha
Helix 7
7
D
523 527Right-handed 310
Helix 8
8
D
533 542Right-handed alpha
Helix 9
9
B
13 17Right-handed alpha
Helix 10
10
B
44 46Right-handed 310
Helix 11
11
E
436 448Right-handed alpha
Helix 12
12
E
461 471Right-handed alpha
Helix 13
13
E
474 481Right-handed alpha
Helix 14
14
E
495 506Right-handed alpha
Helix 15
15
E
523 527Right-handed 310
Helix 16
16
E
533 542Right-handed alpha
Helix 17
17
C
13 17Right-handed alpha
Helix 18
18
C
44 46Right-handed 310
Helix 19
19
F
436 448Right-handed alpha
Helix 20
20
F
461 471Right-handed alpha
Helix 21
21
F
474 481Right-handed alpha
Helix 22
22
F
495 505Right-handed alpha
Helix 23
23
F
523 527Right-handed 310
Helix 24
24
F
533 543Right-handed alpha
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There are 12 sheets in PDB entry 1VRS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
18 25first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
80 100anti-parallel
Strand 4
A
47 55anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
18 25first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
80 100anti-parallel
Strand 4
A
113 118anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
64 68first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
39 42anti-parallel
Strand 4
A
102 104anti-parallel
Strand 5
A
108 109anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
432 433first strand
Strand 2
D
485 490parallel
Strand 3
D
452 457parallel
Strand 4
D
512 516anti-parallel
Strand 5
D
528 529anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
18 25first strand
Strand 2
B
28 35anti-parallel
Strand 3
B
80 100anti-parallel
Strand 4
B
47 55anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
18 25first strand
Strand 2
B
28 35anti-parallel
Strand 3
B
80 100anti-parallel
Strand 4
B
113 118anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
64 67first strand
Strand 2
B
73 77anti-parallel
Strand 3
B
39 42anti-parallel
Strand 4
B
102 104anti-parallel
Strand 5
B
108 109anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
432 433first strand
Strand 2
E
485 490parallel
Strand 3
E
452 457parallel
Strand 4
E
512 516anti-parallel
Strand 5
E
528 529anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
18 25first strand
Strand 2
C
28 35anti-parallel
Strand 3
C
80 100anti-parallel
Strand 4
C
47 55anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
18 25first strand
Strand 2
C
28 35anti-parallel
Strand 3
C
80 100anti-parallel
Strand 4
C
113 118anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
64 68first strand
Strand 2
C
72 77anti-parallel
Strand 3
C
39 42anti-parallel
Strand 4
C
102 104anti-parallel
Strand 5
C
108 109anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
432 433first strand
Strand 2
F
485 490parallel
Strand 3
F
452 457parallel
Strand 4
F
512 516anti-parallel
Strand 5
F
528 529anti-parallel
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