Analysis of interatomic Contacts of Structural Units in PDB entry:
1VS0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VS0 entry

There are 4 chains in PDB entry 1VS0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 453GLY 480
A
TRP 482GLU 759
B
PHE 453GLY 480
B
TRP 482GLU 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 1VS0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
454 458Right-handed 310
Helix 2
2
A
506 512Right-handed 310
Helix 3
3
A
513 520Right-handed alpha
Helix 4
4
A
541 547Right-handed alpha
Helix 5
5
A
573 588Right-handed alpha
Helix 6
6
A
599 610Right-handed alpha
Helix 7
7
A
684 696Right-handed alpha
Helix 8
8
A
697 699Right-handed 310
Helix 9
9
A
710 715Right-handed alpha
Helix 10
10
A
752 756Right-handed 310
Helix 11
11
B
454 458Right-handed 310
Helix 12
12
B
506 512Right-handed 310
Helix 13
13
B
513 520Right-handed alpha
Helix 14
14
B
541 547Right-handed alpha
Helix 15
15
B
573 588Right-handed alpha
Helix 16
16
B
599 611Right-handed alpha
Helix 17
17
B
684 696Right-handed alpha
Helix 18
18
B
710 715Right-handed alpha
Helix 19
19
B
752 756Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 1VS0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
462 465first strand
Strand 2
A
629 637parallel
Strand 3
A
614 619anti-parallel
Strand 4
A
476 481anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
495 500first strand
Strand 2
A
485 492anti-parallel
Strand 3
A
524 532anti-parallel
Strand 4
A
555 564anti-parallel
Strand 5
A
567 568anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
672 679first strand
Strand 2
A
662 669anti-parallel
Strand 3
A
640 650anti-parallel
Strand 4
A
717 719anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
672 679first strand
Strand 2
A
662 669anti-parallel
Strand 3
A
640 650anti-parallel
Strand 4
A
725 730anti-parallel
Strand 5
A
743 747anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
462 465first strand
Strand 2
B
629 637parallel
Strand 3
B
614 619anti-parallel
Strand 4
B
476 479anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
495 500first strand
Strand 2
B
485 492anti-parallel
Strand 3
B
524 532anti-parallel
Strand 4
B
555 564anti-parallel
Strand 5
B
567 568anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
672 679first strand
Strand 2
B
660 669anti-parallel
Strand 3
B
640 651anti-parallel
Strand 4
B
717 720anti-parallel
Strand 5
B
699 700anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
672 679first strand
Strand 2
B
660 669anti-parallel
Strand 3
B
640 651anti-parallel
Strand 4
B
725 730anti-parallel
Strand 5
B
743 747anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il