Analysis of interatomic Contacts of Structural Units in PDB entry:
1VS1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VS1 entry

There are 4 chains in PDB entry 1VS1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7LEU 276
B
 PHE 10LEU 276
C
 GLY 9LEU 276
D
 PRO 6LEU 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 1VS1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 65Right-handed alpha
Helix 2
2
A
87 102Right-handed alpha
Helix 3
3
A
111 113Right-handed 310
Helix 4
4
A
114 122Right-handed alpha
Helix 5
5
A
128 132Right-handed 310
Helix 6
6
A
134 145Right-handed alpha
Helix 7
7
A
157 171Right-handed alpha
Helix 8
8
A
195 206Right-handed alpha
Helix 9
9
A
214 219Right-handed alpha
Helix 10
10
A
220 222Right-handed 310
Helix 11
11
A
223 234Right-handed alpha
Helix 12
12
A
246 250Right-handed 310
Helix 13
13
A
253 257Right-handed 310
Helix 14
14
A
259 273Right-handed alpha
Helix 15
15
B
50 65Right-handed alpha
Helix 16
16
B
87 102Right-handed alpha
Helix 17
17
B
111 113Right-handed 310
Helix 18
18
B
114 122Right-handed alpha
Helix 19
19
B
128 132Right-handed 310
Helix 20
20
B
134 145Right-handed alpha
Helix 21
21
B
157 171Right-handed alpha
Helix 22
22
B
195 206Right-handed alpha
Helix 23
23
B
214 219Right-handed alpha
Helix 24
24
B
220 222Right-handed 310
Helix 25
25
B
223 234Right-handed alpha
Helix 26
26
B
246 250Right-handed 310
Helix 27
27
B
253 257Right-handed 310
Helix 28
28
B
259 273Right-handed alpha
Helix 29
29
C
50 65Right-handed alpha
Helix 30
30
C
87 102Right-handed alpha
Helix 31
31
C
111 113Right-handed 310
Helix 32
32
C
114 122Right-handed alpha
Helix 33
33
C
129 132Right-handed 310
Helix 34
34
C
134 144Right-handed alpha
Helix 35
35
C
157 171Right-handed alpha
Helix 36
36
C
195 206Right-handed alpha
Helix 37
37
C
214 219Right-handed alpha
Helix 38
38
C
220 222Right-handed 310
Helix 39
39
C
223 234Right-handed alpha
Helix 40
40
C
246 250Right-handed 310
Helix 41
41
C
259 273Right-handed alpha
Helix 42
42
D
50 65Right-handed alpha
Helix 43
43
D
87 102Right-handed alpha
Helix 44
44
D
111 113Right-handed 310
Helix 45
45
D
114 122Right-handed alpha
Helix 46
46
D
128 132Right-handed 310
Helix 47
47
D
134 144Right-handed alpha
Helix 48
48
D
157 171Right-handed alpha
Helix 49
49
D
195 206Right-handed alpha
Helix 50
50
D
214 219Right-handed alpha
Helix 51
51
D
220 222Right-handed 310
Helix 52
52
D
223 234Right-handed alpha
Helix 53
53
D
246 250Right-handed 310
Helix 54
54
D
259 273Right-handed alpha
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There are 8 sheets in PDB entry 1VS1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
32 34anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
68 70parallel
Strand 3
A
105 108parallel
Strand 4
A
124 127parallel
Strand 5
A
148 151parallel
Strand 6
A
176 180parallel
Strand 7
A
210 212parallel
Strand 8
A
238 242parallel
Strand 9
A
40 44parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
32 34anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
68 70parallel
Strand 3
B
105 108parallel
Strand 4
B
124 127parallel
Strand 5
B
148 151parallel
Strand 6
B
176 180parallel
Strand 7
B
210 212parallel
Strand 8
B
238 242parallel
Strand 9
B
40 44parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 29first strand
Strand 2
C
32 34anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 44first strand
Strand 2
C
68 70parallel
Strand 3
C
105 109parallel
Strand 4
C
124 127parallel
Strand 5
C
148 151parallel
Strand 6
C
176 180parallel
Strand 7
C
210 212parallel
Strand 8
C
238 242parallel
Strand 9
C
40 44parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 29first strand
Strand 2
D
32 34anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 44first strand
Strand 2
D
68 70parallel
Strand 3
D
105 108parallel
Strand 4
D
124 127parallel
Strand 5
D
148 151parallel
Strand 6
D
176 180parallel
Strand 7
D
210 212parallel
Strand 8
D
238 242parallel
Strand 9
D
40 44parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il