Analysis of interatomic Contacts of Structural Units in PDB entry:
1VS3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VS3 entry

There are 2 chains in PDB entry 1VS3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 249
B
 MET 1GLU 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 1VS3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 15Right-handed 310
Helix 2
2
A
27 36Right-handed alpha
Helix 3
3
A
37 40Right-handed 310
Helix 4
4
A
71 73Right-handed 310
Helix 5
5
A
74 83Right-handed alpha
Helix 6
6
A
136 148Right-handed alpha
Helix 7
7
A
154 157Right-handed 310
Helix 8
8
A
196 211Right-handed alpha
Helix 9
9
A
214 216Right-handed 310
Helix 10
10
A
217 225Right-handed alpha
Helix 11
11
A
226 230Right-handed 310
Helix 12
12
A
235 237Right-handed 310
Helix 13
13
B
27 36Right-handed alpha
Helix 14
14
B
37 40Right-handed 310
Helix 15
15
B
71 73Right-handed 310
Helix 16
16
B
74 83Right-handed alpha
Helix 17
17
B
136 148Right-handed alpha
Helix 18
18
B
154 157Right-handed 310
Helix 19
19
B
196 210Right-handed alpha
Helix 20
20
B
216 225Right-handed alpha
Helix 21
21
B
226 230Right-handed 310
Helix 22
22
B
235 237Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 1VS3. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
56 66anti-parallel
Strand 3
A
239 245parallel
Strand 4
A
107 116anti-parallel
Strand 5
A
129 131parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 95first strand
Strand 2
A
2 10anti-parallel
Strand 3
A
56 66anti-parallel
Strand 4
A
239 245parallel
Strand 5
A
107 116anti-parallel
Strand 6
A
182 190anti-parallel
Strand 7
A
165 177anti-parallel
Strand 8
A
149 152anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
56 66anti-parallel
Strand 3
B
239 245parallel
Strand 4
B
107 116anti-parallel
Strand 5
B
129 131parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 95first strand
Strand 2
B
2 10anti-parallel
Strand 3
B
56 66anti-parallel
Strand 4
B
239 245parallel
Strand 5
B
107 116anti-parallel
Strand 6
B
182 190anti-parallel
Strand 7
B
165 177anti-parallel
Strand 8
B
149 152anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il