Analysis of interatomic Contacts of Structural Units in PDB entry:
1VTO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VTO entry

There are 6 chains in PDB entry 1VTO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 201 A 214
D
 T 215 C 228
E
 G 301 A 314
F
 T 315 C 328
A
 VAL 12ILE 198
B
 PRO 1011ILE 1198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1VTO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 46Right-handed alpha
Helix 2
2
A
87 46Right-handed alpha
Helix 3
3
A
130 136Right-handed alpha
Helix 4
4
A
178 194Right-handed alpha
Helix 5
5
B
1040 1046Right-handed alpha
Helix 6
6
B
1087 1103Right-handed alpha
Helix 7
7
B
1130 1136Right-handed alpha
Helix 8
8
B
1178 1194Right-handed alpha
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There are 2 sheets in PDB entry 1VTO. Click on sheet of interest to get list of strands forming it: 1, 2,

There are 9 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
60 64anti-parallel
Strand 3
A
69 73anti-parallel
Strand 4
A
78 84anti-parallel
Strand 5
A
24 33anti-parallel
Strand 6
A
55 123anti-parallel
Strand 7
A
169 175anti-parallel
Strand 8
A
160 164anti-parallel
Strand 9
A
151 155anti-parallel
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There are 8 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1060 1064first strand
Strand 2
B
1069 1073anti-parallel
Strand 3
B
1078 1084anti-parallel
Strand 4
B
1024 1033anti-parallel
Strand 5
B
1111 1123anti-parallel
Strand 6
B
1169 1175anti-parallel
Strand 7
B
1160 1164anti-parallel
Strand 8
B
1151 1155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il