Analysis of interatomic Contacts of Structural Units in PDB entry:
1VYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1VYA entry

There are 12 chains in PDB entry 1VYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 149
B	MET 1	LYS 149
C	MET 1	LYS 149
D	MET 1	LYS 149
E	MET 1	LYS 149
F	MET 1	LYS 149
G	MET 1	LYS 149
H	MET 1	LYS 149
I	MET 1	LYS 149
J	MET 1	LYS 149
K	MET 1	LYS 149
L	MET 1	LYS 149

There are118 helices in PDB entry 1VYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	15	Right-handed alpha
Helix 2	AA2	A	17	29	Right-handed alpha
Helix 3	AA3	A	41	49	Right-handed alpha
Helix 4	AA4	A	50	53	Right-handed 310
Helix 5	AA5	A	57	66	Right-handed alpha
Helix 6	AA6	A	79	89	Right-handed alpha
Helix 7	AA7	A	100	106	Right-handed alpha
Helix 8	AA8	A	119	131	Right-handed alpha
Helix 9	AA9	A	142	147	Right-handed alpha
Helix 10	AB1	B	9	15	Right-handed alpha
Helix 11	AB2	B	17	29	Right-handed alpha
Helix 12	AB3	B	41	49	Right-handed alpha
Helix 13	AB4	B	50	53	Right-handed 310
Helix 14	AB5	B	57	66	Right-handed alpha
Helix 15	AB6	B	79	89	Right-handed alpha
Helix 16	AB7	B	100	106	Right-handed alpha
Helix 17	AB8	B	108	112	Right-handed 310
Helix 18	AB9	B	119	131	Right-handed alpha
Helix 19	AC1	B	142	147	Right-handed alpha
Helix 20	AC2	C	9	15	Right-handed alpha
Helix 21	AC3	C	17	29	Right-handed alpha
Helix 22	AC4	C	41	49	Right-handed alpha
Helix 23	AC5	C	50	53	Right-handed 310
Helix 24	AC6	C	57	66	Right-handed alpha
Helix 25	AC7	C	79	89	Right-handed alpha
Helix 26	AC8	C	92	96	Right-handed 310
Helix 27	AC9	C	100	106	Right-handed alpha
Helix 28	AD1	C	108	112	Right-handed 310
Helix 29	AD2	C	119	131	Right-handed alpha
Helix 30	AD3	C	142	147	Right-handed alpha
Helix 31	AD4	D	9	15	Right-handed alpha
Helix 32	AD5	D	17	29	Right-handed alpha
Helix 33	AD6	D	41	49	Right-handed alpha
Helix 34	AD7	D	50	53	Right-handed 310
Helix 35	AD8	D	57	66	Right-handed alpha
Helix 36	AD9	D	79	89	Right-handed alpha
Helix 37	AE1	D	100	106	Right-handed alpha
Helix 38	AE2	D	108	112	Right-handed 310
Helix 39	AE3	D	119	131	Right-handed alpha
Helix 40	AE4	D	142	147	Right-handed alpha
Helix 41	AE5	E	9	15	Right-handed alpha
Helix 42	AE6	E	17	29	Right-handed alpha
Helix 43	AE7	E	41	49	Right-handed alpha
Helix 44	AE8	E	50	53	Right-handed 310
Helix 45	AE9	E	57	66	Right-handed alpha
Helix 46	AF1	E	79	89	Right-handed alpha
Helix 47	AF2	E	100	106	Right-handed alpha
Helix 48	AF3	E	119	131	Right-handed alpha
Helix 49	AF4	E	142	147	Right-handed alpha
Helix 50	AF5	F	9	15	Right-handed alpha
Helix 51	AF6	F	17	29	Right-handed alpha
Helix 52	AF7	F	41	49	Right-handed alpha
Helix 53	AF8	F	50	53	Right-handed 310
Helix 54	AF9	F	57	66	Right-handed alpha
Helix 55	AG1	F	79	89	Right-handed alpha
Helix 56	AG2	F	100	106	Right-handed alpha
Helix 57	AG3	F	108	112	Right-handed 310
Helix 58	AG4	F	119	131	Right-handed alpha
Helix 59	AG5	F	142	147	Right-handed alpha
Helix 60	AG6	G	9	15	Right-handed alpha
Helix 61	AG7	G	17	29	Right-handed alpha
Helix 62	AG8	G	41	49	Right-handed alpha
Helix 63	AG9	G	50	53	Right-handed 310
Helix 64	AH1	G	57	66	Right-handed alpha
Helix 65	AH2	G	79	89	Right-handed alpha
Helix 66	AH3	G	100	106	Right-handed alpha
Helix 67	AH4	G	108	112	Right-handed 310
Helix 68	AH5	G	119	131	Right-handed alpha
Helix 69	AH6	G	142	147	Right-handed alpha
Helix 70	AH7	H	9	15	Right-handed alpha
Helix 71	AH8	H	17	29	Right-handed alpha
Helix 72	AH9	H	41	49	Right-handed alpha
Helix 73	AI1	H	50	53	Right-handed 310
Helix 74	AI2	H	57	66	Right-handed alpha
Helix 75	AI3	H	79	89	Right-handed alpha
Helix 76	AI4	H	100	106	Right-handed alpha
Helix 77	AI5	H	108	112	Right-handed 310
Helix 78	AI6	H	119	131	Right-handed alpha
Helix 79	AI7	H	142	147	Right-handed alpha
Helix 80	AI8	I	9	15	Right-handed alpha
Helix 81	AI9	I	17	29	Right-handed alpha
Helix 82	AJ1	I	41	49	Right-handed alpha
Helix 83	AJ2	I	50	53	Right-handed 310
Helix 84	AJ3	I	57	66	Right-handed alpha
Helix 85	AJ4	I	79	89	Right-handed alpha
Helix 86	AJ5	I	92	96	Right-handed 310
Helix 87	AJ6	I	100	106	Right-handed alpha
Helix 88	AJ7	I	108	112	Right-handed 310
Helix 89	AJ8	I	119	131	Right-handed alpha
Helix 90	AJ9	I	142	147	Right-handed alpha
Helix 91	AK1	J	9	15	Right-handed alpha
Helix 92	AK2	J	17	29	Right-handed alpha
Helix 93	AK3	J	41	49	Right-handed alpha
Helix 94	AK4	J	50	53	Right-handed 310
Helix 95	AK5	J	57	66	Right-handed alpha
Helix 96	AK6	J	79	89	Right-handed alpha
Helix 97	AK7	J	100	106	Right-handed alpha
Helix 98	AK8	J	119	131	Right-handed alpha
Helix 99	AK9	J	142	147	Right-handed alpha
Helix 100	AL1	K	9	15	Right-handed alpha
Helix 101	AL2	K	17	29	Right-handed alpha
Helix 102	AL3	K	41	49	Right-handed alpha
Helix 103	AL4	K	50	53	Right-handed 310
Helix 104	AL5	K	57	66	Right-handed alpha
Helix 105	AL6	K	79	89	Right-handed alpha
Helix 106	AL7	K	100	106	Right-handed alpha
Helix 107	AL8	K	108	112	Right-handed 310
Helix 108	AL9	K	119	131	Right-handed alpha
Helix 109	AM1	K	142	147	Right-handed alpha
Helix 110	AM2	L	9	15	Right-handed alpha
Helix 111	AM3	L	17	29	Right-handed alpha
Helix 112	AM4	L	41	49	Right-handed alpha
Helix 113	AM5	L	50	53	Right-handed 310
Helix 114	AM6	L	57	66	Right-handed alpha
Helix 115	AM7	L	79	89	Right-handed alpha
Helix 116	AM8	L	100	106	Right-handed alpha
Helix 117	AM9	L	119	131	Right-handed alpha
Helix 118	AN1	L	142	147	Right-handed alpha

There are 12 sheets in PDB entry 1VYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	39	first strand
Strand 2	A	69	76	anti-parallel
Strand 3	A	3	8	anti-parallel
Strand 4	A	114	116	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	38	first strand
Strand 2	B	70	76	anti-parallel
Strand 3	B	3	8	anti-parallel
Strand 4	B	114	116	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	38	first strand
Strand 2	C	70	76	anti-parallel
Strand 3	C	3	8	anti-parallel
Strand 4	C	114	116	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	38	first strand
Strand 2	D	70	76	anti-parallel
Strand 3	D	3	8	anti-parallel
Strand 4	D	114	116	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	38	first strand
Strand 2	E	70	76	anti-parallel
Strand 3	E	3	8	anti-parallel
Strand 4	E	114	116	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	38	first strand
Strand 2	F	70	76	anti-parallel
Strand 3	F	3	8	anti-parallel
Strand 4	F	114	116	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	38	first strand
Strand 2	G	70	76	anti-parallel
Strand 3	G	3	8	anti-parallel
Strand 4	G	114	116	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	38	first strand
Strand 2	H	70	76	anti-parallel
Strand 3	H	3	8	anti-parallel
Strand 4	H	114	116	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	31	38	first strand
Strand 2	I	70	76	anti-parallel
Strand 3	I	3	8	anti-parallel
Strand 4	I	114	116	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	31	38	first strand
Strand 2	J	70	76	anti-parallel
Strand 3	J	3	8	anti-parallel
Strand 4	J	114	116	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	31	38	first strand
Strand 2	K	70	76	anti-parallel
Strand 3	K	3	8	anti-parallel
Strand 4	K	114	116	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	38	first strand
Strand 2	L	70	76	anti-parallel
Strand 3	L	3	8	anti-parallel
Strand 4	L	114	116	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1VYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
1VYA