Analysis of interatomic Contacts of Structural Units in PDB entry:
1VYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VYB entry

There are 2 chains in PDB entry 1VYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3ARG 238
B
 SER 6ARG 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1VYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 35Right-handed alpha
Helix 2
2
A
50 54Right-handed 310
Helix 3
3
A
120 132Right-handed alpha
Helix 4
4
A
151 154Right-handed 310
Helix 5
5
A
162 175Right-handed alpha
Helix 6
6
A
180 185Right-handed alpha
Helix 7
7
A
212 215Right-handed 310
Helix 8
8
B
20 35Right-handed alpha
Helix 9
9
B
50 54Right-handed 310
Helix 10
10
B
120 132Right-handed alpha
Helix 11
11
B
151 154Right-handed 310
Helix 12
12
B
162 175Right-handed alpha
Helix 13
13
B
180 185Right-handed alpha
Helix 14
14
B
212 215Right-handed 310
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There are 6 sheets in PDB entry 1VYB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
8 14parallel
Strand 5
A
232 237anti-parallel
Strand 6
A
217 223anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 91first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
107 115anti-parallel
Strand 4
A
140 145parallel
Strand 5
A
205 210anti-parallel
Strand 6
A
177 179anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
200 202anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
74 78anti-parallel
Strand 3
B
38 42anti-parallel
Strand 4
B
8 14parallel
Strand 5
B
232 237anti-parallel
Strand 6
B
217 223anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 91first strand
Strand 2
B
97 104anti-parallel
Strand 3
B
107 115anti-parallel
Strand 4
B
140 145parallel
Strand 5
B
205 210anti-parallel
Strand 6
B
177 179anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
200 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il