Analysis of interatomic Contacts of Structural Units in PDB entry:
1VYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VYT entry

There are 4 chains in PDB entry 1VYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 38HIS 362
B
 GLU 38PRO 363
E
 GLN 422ASP 446
F
 LEU 430ASP 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1VYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 55Right-handed alpha
Helix 2
2
A
56 58Right-handed 310
Helix 3
3
A
120 130Right-handed alpha
Helix 4
4
A
190 208Right-handed alpha
Helix 5
5
A
220 224Right-handed 310
Helix 6
6
A
246 263Right-handed alpha
Helix 7
7
A
277 282Right-handed alpha
Helix 8
8
A
296 306Right-handed alpha
Helix 9
9
A
308 314Right-handed alpha
Helix 10
10
A
314 327Right-handed alpha
Helix 11
11
A
329 333Right-handed 310
Helix 12
12
A
341 360Right-handed alpha
Helix 13
13
B
40 56Right-handed alpha
Helix 14
14
B
73 75Right-handed 310
Helix 15
15
B
120 130Right-handed alpha
Helix 16
16
B
190 208Right-handed alpha
Helix 17
17
B
220 224Right-handed 310
Helix 18
18
B
230 240Right-handed alpha
Helix 19
19
B
241 243Right-handed 310
Helix 20
20
B
245 262Right-handed alpha
Helix 21
21
B
277 282Right-handed alpha
Helix 22
22
B
296 306Right-handed alpha
Helix 23
23
B
308 314Right-handed alpha
Helix 24
24
B
314 327Right-handed alpha
Helix 25
25
B
341 358Right-handed alpha
Helix 26
26
E
423 445Right-handed alpha
Helix 27
27
F
430 444Right-handed alpha
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There are 7 sheets in PDB entry 1VYT. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
62 66anti-parallel
Strand 5
A
171 174anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
86 87anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
266 271parallel
Strand 3
A
180 183parallel
Strand 4
A
288 292parallel
Strand 5
A
335 337parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
103 108anti-parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
62 66anti-parallel
Strand 5
B
171 174anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
86 87anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 183first strand
Strand 2
B
288 292parallel
Strand 3
B
335 337parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 217first strand
Strand 2
B
266 271parallel
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