Analysis of interatomic Contacts of Structural Units in PDB entry:
1VYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VYU entry

There are 2 chains in PDB entry 1VYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 39PRO 363
B
 VAL 31HIS 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1VYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 56Right-handed alpha
Helix 2
2
A
73 75Right-handed 310
Helix 3
3
A
120 132Right-handed alpha
Helix 4
4
A
190 208Right-handed alpha
Helix 5
5
A
220 224Right-handed 310
Helix 6
6
A
246 263Right-handed alpha
Helix 7
7
A
276 280Right-handed 310
Helix 8
8
A
296 306Right-handed alpha
Helix 9
9
A
308 313Right-handed alpha
Helix 10
10
A
314 327Right-handed alpha
Helix 11
11
A
329 333Right-handed 310
Helix 12
12
A
341 361Right-handed alpha
Helix 13
13
B
33 56Right-handed alpha
Helix 14
14
B
73 75Right-handed 310
Helix 15
15
B
120 135Right-handed alpha
Helix 16
16
B
190 208Right-handed alpha
Helix 17
17
B
220 224Right-handed 310
Helix 18
18
B
246 262Right-handed alpha
Helix 19
19
B
277 282Right-handed alpha
Helix 20
20
B
296 307Right-handed alpha
Helix 21
21
B
308 313Right-handed alpha
Helix 22
22
B
319 328Right-handed alpha
Helix 23
23
B
329 333Right-handed 310
Helix 24
24
B
341 361Right-handed alpha
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There are 6 sheets in PDB entry 1VYU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
62 66anti-parallel
Strand 5
A
171 174anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
86 87anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
266 271parallel
Strand 3
A
180 183parallel
Strand 4
A
288 292parallel
Strand 5
A
335 337parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
103 108anti-parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
62 66anti-parallel
Strand 5
B
171 174anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
86 87anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 217first strand
Strand 2
B
266 271parallel
Strand 3
B
180 183parallel
Strand 4
B
288 292parallel
Strand 5
B
335 337parallel
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