Analysis of interatomic Contacts of Structural Units in PDB entry:
1VYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VYV entry

There are 2 chains in PDB entry 1VYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 71THR 403
B
 GLU 70THR 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 1VYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 89Right-handed alpha
Helix 2
2
A
152 162Right-handed alpha
Helix 3
3
A
231 249Right-handed alpha
Helix 4
4
A
261 265Right-handed 310
Helix 5
5
A
287 303Right-handed alpha
Helix 6
6
A
317 322Right-handed 310
Helix 7
7
A
337 347Right-handed alpha
Helix 8
8
A
349 354Right-handed alpha
Helix 9
9
A
355 368Right-handed alpha
Helix 10
10
A
370 374Right-handed 310
Helix 11
11
A
382 402Right-handed alpha
Helix 12
12
B
71 86Right-handed alpha
Helix 13
13
B
152 162Right-handed alpha
Helix 14
14
B
231 249Right-handed alpha
Helix 15
15
B
261 265Right-handed 310
Helix 16
16
B
287 303Right-handed alpha
Helix 17
17
B
317 322Right-handed 310
Helix 18
18
B
337 347Right-handed alpha
Helix 19
19
B
349 354Right-handed alpha
Helix 20
20
B
355 368Right-handed alpha
Helix 21
21
B
370 374Right-handed 310
Helix 22
22
B
382 400Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1VYV. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
124 132anti-parallel
Strand 4
A
94 98anti-parallel
Strand 5
A
212 215anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 258first strand
Strand 2
A
307 312parallel
Strand 3
A
221 224parallel
Strand 4
A
329 333parallel
Strand 5
A
376 378parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 151first strand
Strand 2
B
135 140anti-parallel
Strand 3
B
124 132anti-parallel
Strand 4
B
94 98anti-parallel
Strand 5
B
212 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 254first strand
Strand 2
B
307 312parallel
Strand 3
B
221 224parallel
Strand 4
B
329 333parallel
Strand 5
B
376 378parallel
Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 254first strand
Strand 2
B
307 312parallel
Strand 3
B
257 258parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il