Analysis of interatomic Contacts of Structural Units in PDB entry:
1VZ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VZ0 entry

There are 8 chains in PDB entry 1VZ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 23LEU 209
B
VAL 23MET 215
C
VAL 23ARG 212
D
VAL 23MET 215
E
VAL 23ALA 214
F
VAL 23GLU 211
G
VAL 23LEU 209
H
VAL 23ARG 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 1VZ0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
37 58Right-handed alpha
Helix 2
2
A
77 88Right-handed alpha
Helix 3
3
A
100 115Right-handed alpha
Helix 4
4
A
119 133Right-handed alpha
Helix 5
5
A
136 145Right-handed alpha
Helix 6
6
A
147 157Right-handed alpha
Helix 7
7
A
158 160Right-handed 310
Helix 8
8
A
161 170Right-handed alpha
Helix 9
9
A
174 183Right-handed alpha
Helix 10
10
A
185 187Right-handed 310
Helix 11
11
A
188 199Right-handed alpha
Helix 12
12
A
202 207Right-handed alpha
Helix 13
13
B
37 58Right-handed alpha
Helix 14
14
B
77 88Right-handed alpha
Helix 15
15
B
100 113Right-handed alpha
Helix 16
16
B
119 133Right-handed alpha
Helix 17
17
B
136 145Right-handed alpha
Helix 18
18
B
147 157Right-handed alpha
Helix 19
19
B
158 160Right-handed 310
Helix 20
20
B
161 170Right-handed alpha
Helix 21
21
B
174 183Right-handed alpha
Helix 22
22
B
185 187Right-handed 310
Helix 23
23
B
188 199Right-handed alpha
Helix 24
24
B
202 208Right-handed alpha
Helix 25
25
B
209 214Right-handed 310
Helix 26
26
C
37 58Right-handed alpha
Helix 27
27
C
77 87Right-handed alpha
Helix 28
28
C
100 115Right-handed alpha
Helix 29
29
C
119 133Right-handed alpha
Helix 30
30
C
136 145Right-handed alpha
Helix 31
31
C
147 157Right-handed alpha
Helix 32
32
C
158 160Right-handed 310
Helix 33
33
C
161 170Right-handed alpha
Helix 34
34
C
174 184Right-handed alpha
Helix 35
35
C
185 187Right-handed 310
Helix 36
36
C
188 200Right-handed alpha
Helix 37
37
C
202 208Right-handed alpha
Helix 38
38
D
37 58Right-handed alpha
Helix 39
39
D
77 87Right-handed alpha
Helix 40
40
D
100 113Right-handed alpha
Helix 41
41
D
119 133Right-handed alpha
Helix 42
42
D
136 145Right-handed alpha
Helix 43
43
D
147 157Right-handed alpha
Helix 44
44
D
158 160Right-handed 310
Helix 45
45
D
161 170Right-handed alpha
Helix 46
46
D
174 183Right-handed alpha
Helix 47
47
D
185 187Right-handed 310
Helix 48
48
D
188 200Right-handed alpha
Helix 49
49
D
202 207Right-handed alpha
Helix 50
50
D
208 214Right-handed alpha
Helix 51
51
E
37 55Right-handed alpha
Helix 52
52
E
77 87Right-handed alpha
Helix 53
53
E
100 113Right-handed alpha
Helix 54
54
E
119 133Right-handed alpha
Helix 55
55
E
136 145Right-handed alpha
Helix 56
56
E
147 156Right-handed alpha
Helix 57
57
E
157 160Right-handed 310
Helix 58
58
E
161 170Right-handed alpha
Helix 59
59
E
174 182Right-handed alpha
Helix 60
60
E
185 187Right-handed 310
Helix 61
61
E
188 200Right-handed alpha
Helix 62
62
E
202 208Right-handed alpha
Helix 63
63
E
209 211Right-handed 310
Helix 64
64
F
37 58Right-handed alpha
Helix 65
65
F
77 88Right-handed alpha
Helix 66
66
F
100 113Right-handed alpha
Helix 67
67
F
119 133Right-handed alpha
Helix 68
68
F
136 145Right-handed alpha
Helix 69
69
F
147 157Right-handed alpha
Helix 70
70
F
158 160Right-handed 310
Helix 71
71
F
161 170Right-handed alpha
Helix 72
72
F
174 183Right-handed alpha
Helix 73
73
F
185 187Right-handed 310
Helix 74
74
F
188 199Right-handed alpha
Helix 75
75
F
202 208Right-handed alpha
Helix 76
76
G
27 29Right-handed 310
Helix 77
77
G
37 58Right-handed alpha
Helix 78
78
G
77 88Right-handed alpha
Helix 79
79
G
100 114Right-handed alpha
Helix 80
80
G
119 133Right-handed alpha
Helix 81
81
G
136 145Right-handed alpha
Helix 82
82
G
147 157Right-handed alpha
Helix 83
83
G
158 160Right-handed 310
Helix 84
84
G
161 170Right-handed alpha
Helix 85
85
G
174 183Right-handed alpha
Helix 86
86
G
185 187Right-handed 310
Helix 87
87
G
188 199Right-handed alpha
Helix 88
88
G
199 208Right-handed alpha
Helix 89
89
H
37 58Right-handed alpha
Helix 90
90
H
77 88Right-handed alpha
Helix 91
91
H
100 113Right-handed alpha
Helix 92
92
H
119 133Right-handed alpha
Helix 93
93
H
136 145Right-handed alpha
Helix 94
94
H
147 157Right-handed alpha
Helix 95
95
H
158 160Right-handed 310
Helix 96
96
H
161 170Right-handed alpha
Helix 97
97
H
174 184Right-handed alpha
Helix 98
98
H
185 187Right-handed 310
Helix 99
99
H
188 199Right-handed alpha
Helix 100
100
H
202 208Right-handed alpha
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There are 8 sheets in PDB entry 1VZ0. Click on sheet of interest to get list of strands forming it: AA, CA, BA, GA, A, HA, EA, FA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
24 27first strand
Strand 2
C
91 96anti-parallel
Strand 3
C
63 68parallel
Strand 4
C
71 76anti-parallel
Strand 5
A
31 32parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
24 27first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
63 68parallel
Strand 4
A
71 76anti-parallel
Strand 5
C
31 32parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
24 27first strand
Strand 2
G
91 96anti-parallel
Strand 3
G
63 68parallel
Strand 4
G
71 76anti-parallel
Strand 5
B
31 32parallel
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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
24 26first strand
Strand 2
B
92 96anti-parallel
Strand 3
B
63 68parallel
Strand 4
B
71 76anti-parallel
Strand 5
G
31 32parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
24 27first strand
Strand 2
H
91 96anti-parallel
Strand 3
H
63 68parallel
Strand 4
H
71 76anti-parallel
Strand 5
D
31 32parallel
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There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
25 27first strand
Strand 2
D
91 96anti-parallel
Strand 3
D
63 67parallel
Strand 4
D
72 76anti-parallel
Strand 5
H
31 32parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
24 27first strand
Strand 2
F
91 96anti-parallel
Strand 3
F
63 68parallel
Strand 4
F
71 76anti-parallel
Strand 5
E
31 32parallel
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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
24 27first strand
Strand 2
E
91 96anti-parallel
Strand 3
E
63 68parallel
Strand 4
E
71 76anti-parallel
Strand 5
F
31 32parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il