Analysis of interatomic Contacts of Structural Units in PDB entry:
1VZ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VZ6 entry

There are 2 chains in PDB entry 1VZ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8GLU 390
B
 THR 8GLU 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1VZ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 61Right-handed alpha
Helix 2
2
A
80 100Right-handed alpha
Helix 3
3
A
102 104Right-handed 310
Helix 4
4
A
119 128Right-handed alpha
Helix 5
5
A
138 146Right-handed alpha
Helix 6
6
A
193 208Right-handed alpha
Helix 7
7
A
209 211Right-handed 310
Helix 8
8
A
236 258Right-handed alpha
Helix 9
9
A
275 288Right-handed alpha
Helix 10
10
A
289 298Right-handed alpha
Helix 11
11
A
302 312Right-handed alpha
Helix 12
12
A
344 355Right-handed alpha
Helix 13
13
A
381 390Right-handed alpha
Helix 14
14
B
51 61Right-handed alpha
Helix 15
15
B
80 100Right-handed alpha
Helix 16
16
B
102 104Right-handed 310
Helix 17
17
B
119 128Right-handed alpha
Helix 18
18
B
138 146Right-handed alpha
Helix 19
19
B
193 208Right-handed alpha
Helix 20
20
B
209 211Right-handed 310
Helix 21
21
B
236 258Right-handed alpha
Helix 22
22
B
275 288Right-handed alpha
Helix 23
23
B
289 298Right-handed alpha
Helix 24
24
B
302 312Right-handed alpha
Helix 25
25
B
344 355Right-handed alpha
Helix 26
26
B
381 390Right-handed alpha
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There are 6 sheets in PDB entry 1VZ6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
106 113parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
223 234anti-parallel
Strand 3
A
183 191parallel
Strand 4
A
163 170anti-parallel
Strand 5
A
154 160anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 334first strand
Strand 2
A
325 328anti-parallel
Strand 3
A
359 365anti-parallel
Strand 4
A
265 273parallel
Strand 5
A
371 378anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 17first strand
Strand 2
B
29 34anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
106 113parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
223 234anti-parallel
Strand 3
B
183 191parallel
Strand 4
B
163 170anti-parallel
Strand 5
B
154 160anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 334first strand
Strand 2
B
325 328anti-parallel
Strand 3
B
359 365anti-parallel
Strand 4
B
265 273parallel
Strand 5
B
371 378anti-parallel
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