Analysis of interatomic Contacts of Structural Units in PDB entry:
1VZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VZ8 entry

There are 4 chains in PDB entry 1VZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8GLU 390
B
 THR 8THR 393
C
 THR 8THR 393
D
 THR 8GLU 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 1VZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 62Right-handed alpha
Helix 2
2
A
80 100Right-handed alpha
Helix 3
3
A
102 106Right-handed 310
Helix 4
4
A
119 130Right-handed alpha
Helix 5
5
A
138 146Right-handed alpha
Helix 6
6
A
193 208Right-handed alpha
Helix 7
7
A
209 211Right-handed 310
Helix 8
8
A
236 258Right-handed alpha
Helix 9
9
A
275 289Right-handed alpha
Helix 10
10
A
289 298Right-handed alpha
Helix 11
11
A
302 312Right-handed alpha
Helix 12
12
A
344 355Right-handed alpha
Helix 13
13
A
381 390Right-handed alpha
Helix 14
14
B
51 61Right-handed alpha
Helix 15
15
B
80 100Right-handed alpha
Helix 16
16
B
102 104Right-handed 310
Helix 17
17
B
119 128Right-handed alpha
Helix 18
18
B
138 146Right-handed alpha
Helix 19
19
B
193 208Right-handed alpha
Helix 20
20
B
209 211Right-handed 310
Helix 21
21
B
236 258Right-handed alpha
Helix 22
22
B
275 288Right-handed alpha
Helix 23
23
B
289 298Right-handed alpha
Helix 24
24
B
302 312Right-handed alpha
Helix 25
25
B
344 357Right-handed alpha
Helix 26
26
B
381 391Right-handed alpha
Helix 27
27
C
51 63Right-handed alpha
Helix 28
28
C
80 100Right-handed alpha
Helix 29
29
C
102 104Right-handed 310
Helix 30
30
C
119 128Right-handed alpha
Helix 31
31
C
139 146Right-handed alpha
Helix 32
32
C
193 208Right-handed alpha
Helix 33
33
C
209 211Right-handed 310
Helix 34
34
C
236 258Right-handed alpha
Helix 35
35
C
275 288Right-handed alpha
Helix 36
36
C
289 298Right-handed alpha
Helix 37
37
C
302 311Right-handed alpha
Helix 38
38
C
344 357Right-handed alpha
Helix 39
39
C
381 391Right-handed alpha
Helix 40
40
D
51 62Right-handed alpha
Helix 41
41
D
80 97Right-handed alpha
Helix 42
42
D
102 106Right-handed 310
Helix 43
43
D
119 129Right-handed alpha
Helix 44
44
D
138 146Right-handed alpha
Helix 45
45
D
193 208Right-handed alpha
Helix 46
46
D
236 258Right-handed alpha
Helix 47
47
D
275 289Right-handed alpha
Helix 48
48
D
289 298Right-handed alpha
Helix 49
49
D
302 311Right-handed alpha
Helix 50
50
D
344 346Right-handed 310
Helix 51
51
D
347 356Right-handed alpha
Helix 52
52
D
381 388Right-handed alpha
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There are 12 sheets in PDB entry 1VZ8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
29 44anti-parallel
Strand 3
A
65 75anti-parallel
Strand 4
A
107 113parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
29 44anti-parallel
Strand 3
A
223 234anti-parallel
Strand 4
A
183 191parallel
Strand 5
A
163 170anti-parallel
Strand 6
A
154 160anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 334first strand
Strand 2
A
325 328anti-parallel
Strand 3
A
359 365anti-parallel
Strand 4
A
265 273parallel
Strand 5
A
371 378anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 17first strand
Strand 2
B
29 34anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
106 113parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
223 228anti-parallel
Strand 3
B
183 188parallel
Strand 4
B
163 170anti-parallel
Strand 5
B
154 160anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 334first strand
Strand 2
B
325 328anti-parallel
Strand 3
B
359 365anti-parallel
Strand 4
B
265 273parallel
Strand 5
B
371 378anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 17first strand
Strand 2
C
29 34anti-parallel
Strand 3
C
68 73anti-parallel
Strand 4
C
106 111parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 44first strand
Strand 2
C
223 228anti-parallel
Strand 3
C
183 188parallel
Strand 4
C
163 170anti-parallel
Strand 5
C
155 160anti-parallel
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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
331 334first strand
Strand 2
C
325 328anti-parallel
Strand 3
C
359 365anti-parallel
Strand 4
C
265 273parallel
Strand 5
C
371 378anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 15first strand
Strand 2
D
29 39anti-parallel
Strand 3
D
65 75anti-parallel
Strand 4
D
110 113parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 44first strand
Strand 2
D
223 226anti-parallel
Strand 3
D
183 187parallel
Strand 4
D
163 170anti-parallel
Strand 5
D
157 160anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 213first strand
Strand 2
D
371 378parallel
Strand 3
D
265 273anti-parallel
Strand 4
D
359 365parallel
Strand 5
D
325 328anti-parallel
Strand 6
D
331 332anti-parallel
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