Analysis of interatomic Contacts of Structural Units in PDB entry:
1VZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VZD entry

There is 1 chain in PDB entry 1VZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1VZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 16Right-handed alpha
Helix 2
2
A
40 42Right-handed 310
Helix 3
3
A
54 66Right-handed alpha
Helix 4
4
A
72 76Right-handed alpha
Helix 5
5
A
83 91Right-handed alpha
Helix 6
6
A
105 109Right-handed 310
Helix 7
7
A
114 118Right-handed 310
Helix 8
8
A
121 130Right-handed alpha
Helix 9
9
A
133 139Right-handed alpha
Helix 10
10
A
146 152Right-handed alpha
Helix 11
11
A
163 173Right-handed alpha
Helix 12
12
A
187 190Right-handed alpha
Helix 13
13
A
225 244Right-handed alpha
Helix 14
14
A
266 273Right-handed alpha
Helix 15
15
A
291 293Right-handed 310
Helix 16
16
A
296 298Right-handed 310
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There are 3 sheets in PDB entry 1VZD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
257 261anti-parallel
Strand 4
A
219 221parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
250 255anti-parallel
Strand 3
A
212 217parallel
Strand 4
A
199 205anti-parallel
Strand 5
A
181 183anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
299 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il