Analysis of interatomic Contacts of Structural Units in PDB entry:
1VZI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VZI entry

There are 2 chains in PDB entry 1VZI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ASN 125
B
 PRO 1ASN 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 2 helices in PDB entry 1VZI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 49Right-handed alpha
Helix 2
2
B
44 49Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1VZI. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
6 8anti-parallel
Strand 3
A
15 20anti-parallel
Strand 4
B
15 20anti-parallel
Strand 5
B
6 8anti-parallel
Strand 6
B
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
26 28anti-parallel
Strand 3
B
26 28anti-parallel
Strand 4
B
31 32anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
58 63anti-parallel
Strand 3
A
99 103anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 124first strand
Strand 2
A
110 115anti-parallel
Strand 3
A
76 83anti-parallel
Strand 4
A
86 91anti-parallel
Strand 5
B
86 91anti-parallel
Strand 6
B
76 83anti-parallel
Strand 7
B
110 115anti-parallel
Strand 8
B
119 124anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 55first strand
Strand 2
B
58 63anti-parallel
Strand 3
B
99 102anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il