Analysis of interatomic Contacts of Structural Units in PDB entry:
1VZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VZM entry

There are 15 chains in PDB entry 1VZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3THR 10
A
 SER 12ARG 14
A
 VAL 16CYS 17
A
 THR 19ASP 24
A
 MET 26PHE 45
B
 GLU 4THR 10
B
 SER 12ARG 14
B
 VAL 16CYS 17
B
 THR 19ASP 24
B
 MET 26PHE 45
C
 LEU 5THR 10
C
 SER 12ARG 14
C
 VAL 16CYS 17
C
 THR 19ASP 24
C
 MET 26PHE 45
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1VZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 18Right-handed alpha
Helix 2
2
A
20 29Right-handed alpha
Helix 3
3
A
31 41Right-handed alpha
Helix 4
4
B
6 18Right-handed alpha
Helix 5
5
B
20 29Right-handed alpha
Helix 6
6
B
31 41Right-handed alpha
Helix 7
7
C
6 18Right-handed alpha
Helix 8
8
C
20 29Right-handed alpha
Helix 9
8
C
31 41Right-handed alpha
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There are no sheets in PDB entry 1VZM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il