Analysis of interatomic Contacts of Structural Units in PDB entry:
1VZO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VZO entry

There is 1 chain in PDB entry 1VZO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 24VAL 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1VZO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 47Right-handed 310
Helix 2
2
A
94 98Right-handed 310
Helix 3
3
A
100 110Right-handed alpha
Helix 4
4
A
138 147Right-handed alpha
Helix 5
5
A
150 171Right-handed alpha
Helix 6
6
A
179 181Right-handed 310
Helix 7
7
A
203 215Right-handed 310
Helix 8
8
A
221 226Right-handed alpha
Helix 9
9
A
234 251Right-handed alpha
Helix 10
10
A
263 274Right-handed alpha
Helix 11
11
A
283 294Right-handed alpha
Helix 12
12
A
297 301Right-handed 310
Helix 13
13
A
308 314Right-handed alpha
Helix 14
14
A
315 319Right-handed 310
Helix 15
15
A
322 328Right-handed alpha
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There are 3 sheets in PDB entry 1VZO. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
85 92anti-parallel
Strand 3
A
198 201anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
117 123anti-parallel
Strand 3
A
126 131anti-parallel
Strand 4
A
77 83anti-parallel
Strand 5
A
61 68anti-parallel
Strand 6
A
49 57anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
191 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il